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Commits on Apr 14, 2020

• Renamed 'mixed' mode to 'combined' mode. Corrected small details in the README.md and CRISPRcasIdentifier.py

  padilha

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Commits on Apr 13, 2020

• removed examples/NC_013722_proteins.fa since it is part of the result of the respective example

  padilha

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• updated Copyright notices, removed 'software' folder and added hmmer and prodigal to crispr-env.yml, changed command line parameter checking to argparse

  padilha

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Commits on Apr 10, 2020

• Removed unnecessary biopython requirement, cleaning files while building docker image

  padilha

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• Reducing docker image size, updating README.md installation instructions and simplifying crispr-env.yml

  padilha

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Commits on Apr 8, 2020

• added detailed instructions to use our DockerHub image

  padilha

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• added some links

  padilha

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• added some links

  padilha

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• Added Dockerfile, updated README.md with instructions to use docker

  padilha

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• Added Dockerfile, updated README.md with instructions to use docker

  padilha

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• Updated README.md with Google Drive's links and added missing requirements to crispr-env.yml

  padilha

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• removed HMM_sets.tar.gz, moved it to Google Drive

  padilha

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• Updating copyright notices, removing old files, cleaning repo

  padilha

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• removed old environment.yml

  padilha

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Commits on Mar 18, 2020

• default parameters and readme

  amri2k

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Commits on Mar 11, 2020

• updated README.md

  amri2k

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• update readme and env files

  amri2k

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Commits on Jan 17, 2020

• Treating empty cassettes and cassettes containing only unknown genes

  amri2k

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Commits on Jan 3, 2020

• removing some proteins from the CORE set to avoid false positive hits

  amri2k

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Commits on Jan 2, 2020

• does not build cascades from dna without core genes or only one gene

  amri2k

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Commits on Dec 18, 2019

• update readme

  amri2k

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Commits on Dec 10, 2019

• updated readme

  amri2k

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Commits on Dec 8, 2019

• added example

  amri2k

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• corrected some typos in README.md; changed all variable names contain…

  amri2k

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Commits on Dec 6, 2019

• moved code from private repo to BackofenLab

  amri2k

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• Update README.md

  amri2k

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• Initial commit

  amri2k

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