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1 parent 3a572c1 commit 97b7a3cCopy full SHA for 97b7a3c
neurodocker/templates/freesurfer.yaml
@@ -56,7 +56,7 @@ binaries:
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# From https://github.com/freesurfer/freesurfer/blob/54018f7d6f620d6288b28f50e14a0a4ba421757c/Dockerfile#L20-L42
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# freesurfer env
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OS: "Linux"
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- PATH: "{{ self.install_path }}/bin:{{ self.install_path }}/fsfast/bin:{{ self.install_path }}/tktools:{{ self.install_path }}/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin"
+ PATH: "{{ self.install_path }}/bin:{{ self.install_path }}/fsfast/bin:{{ self.install_path }}/tktools:{{ self.install_path }}/mni/bin:$PATH"
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FREESURFER_HOME: "{{ self.install_path }}"
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FREESURFER: "{{ self.install_path }}"
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SUBJECTS_DIR: "{{ self.install_path }}/subjects"
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