Update 4.wKDA.R

Author: jessicading

4.wKDA.R

@@ -2,9 +2,6 @@ source("../Mergeomics.R")
 
 setwd("~/Desktop/Mergeomics/")
 
-netfile= (read.table("bayesian_network.txt", header=T, sep='\t', check.names=F, quote=NULL)) 
-modfile=(read.table("merged_modules.txt", header=T, sep='\t', check.names=F, quote=NULL))
-
 job.kda <- list()
 job.kda$label<-"wKDA"
 job.kda$folder<-"Results" ## parent folder for results
@@ -39,4 +36,4 @@ job.kda <- kda.prepare(job.kda)
 job.kda <- kda.analyze(job.kda)
 job.kda <- kda.finish(job.kda)
 
-job.kda <- kda2cytoscape(job.kda)
+job.kda <- kda2cytoscape(job.kda)