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Commits on Feb 28, 2017

• Noted in old script the possibility of missing data if reads in bam were in reverse order.

  jakewendt

  committed
  3ff23f6

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Commits on Jul 23, 2016

• Moved scripts to unreno/genomics so archived here.

  jakewendt

  committed
  9333d81

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Commits on Jul 21, 2016

• Moved script to unreno/genomics so archived here.

  jakewendt

  committed
  1c3b205

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• Moved script to unreno/genomics so archived here.

  jakewendt

  committed
  e81da5b

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• Moved script to unreno/genomics so archived here.

  jakewendt

  committed
  03e9a9e

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Commits on Jul 7, 2016

• Moved script to unreno/genomics so archived here.

  jakewendt

  committed
  92d403e

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Commits on Jul 3, 2016

• Changed all find -depth's to find -maxdepth's as -depth breaks on ec2.

  jakewendt

  committed
  1b5994c

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Commits on Jul 2, 2016

• Corrected find, just in case of usage on ec2

  jakewendt

  committed
  b3bfa26

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• Reordered find options

  jakewendt

  committed
  052e392

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Commits on Jul 1, 2016

• Changed to -maxdepth as find on ec2 raises errors with -depth.

  jakewendt

  committed
  f690586

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• Noted gawk version requirement

  jakewendt

  committed
  a8bbb91

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• Removed -depth 1 from Makefile's uninstall

  jakewendt

  committed
  4b0a962

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• Removed -depth 1 from Makefile's uninstall

  jakewendt

  committed
  62638b0

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Commits on Apr 5, 2016

• Typo

  jakewendt

  committed
  3bb3504

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Commits on Mar 30, 2016

• Added uninstall target

  jakewendt

  committed
  08bd005

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Commits on Mar 3, 2016

• Prepping for more simplification.

  jakewendt

  committed
  4a85f55

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Commits on Mar 1, 2016

• Extracted awk code into awk script.

  jakewendt

  committed
  3276a77

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• Extracted awk code into awk script.

  jakewendt

  committed
  5036e48

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• Removed unneeded variable.

  jakewendt

  committed
  58b223f

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• Merge branch 'master' of github.com:ccls/sequencing

  jakewendt

  committed
  73353ae

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• Allowed passing of root dir.

  jakewendt

  committed
  d6228e3

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• Wrote csv_table_group_rows for merging csv tables.

  jakewendt

  committed
  88962ce

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Commits on Feb 26, 2016

• Added 'or' output to stop non-zero exit code.

  jakewendt

  committed
  f6ea403

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• Cleaned up and added named params.

  jakewendt

  committed
  89cef84

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• Renamed to for consistency

  jakewendt

  committed
  7445e73

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Commits on Feb 25, 2016

• Added core parameter.

  jakewendt

  committed
  6376d23

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Commits on Feb 24, 2016

• Added index parameter.

  jakewendt

  committed
  f241bb4

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Commits on Feb 19, 2016

• Changed all sh scripts to use '/usr/bin/env bash' and 'set -x' where needed.

  jakewendt

  committed
  515738f

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• Added script.

  jakewendt

  committed
  16d776d

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• Created to_table.sh gawk program wrapper. Added skip-table option to insertion_points_to_table

  jakewendt

  committed
  cf1c8ef

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• Changed script shebang

  jakewendt

  committed
  ff60f1d

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Commits on Feb 18, 2016

• Changed location installation.

  jakewendt

  committed
  4f3ec15

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• Changed ALL mapq score to Q00 in all scripts.

  jakewendt

  committed
  f08e23e

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Commits on Feb 17, 2016

• Cleanup

  jakewendt

  committed
  11359a8

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• Made extracting script more usable.

  jakewendt

  committed
  cdcb6e1

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