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Commits on Aug 20, 2015

• Merge pull request #8 from ADerr/2015-08-10_inDrop

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• Merge pull request #7 from afirth/2015-08-15_travis

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• add *.swp to gitignore

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• Set up travis CI

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Commits on Aug 12, 2015

• Changed default input parameter values. Default window length is now 50

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Commits on Aug 6, 2015

• Merge pull request #6 from ADerr/inDrop

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Commits on Aug 5, 2015

• Moved read counter to give real total reads.

  

  derra

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Commits on Aug 3, 2015

• Merge pull request #5 from mgarber/master

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• Added dummy nExp() function to test commit and push.

  

  derra

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Commits on Jul 30, 2015

• Major changes to allow processing of single-cell data from single input

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  derra

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Commits on Jul 23, 2015

• Merge pull request #2 from garber-lab/develop

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  ADerr

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• Merge pull request #1 from garber-lab/develop

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  mgarber

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• Merge pull request #4 from ADerr/inDrop

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• Merging inDrop processing

  

  derra

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Commits on Jul 22, 2015

• Merge pull request #3 from ADerr/inDrop

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• Merge branch 'master' of https://github.com/ADerr/ESAT.git

  

  derra

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Commits on Jul 20, 2015

• Added preprocessing step for inDrop data. This is probably not the

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• Merge pull request #2 from elisadonnard/master

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Commits on Jul 17, 2015

• Added the initial ribosat modifications, pval and score for each window

  elisadonnard

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Commits on Jun 17, 2015

• Merge pull request #1 from mgarber/master

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• Fixed naming bug. Machine name was twice added to the read identification string

  mgarber

  committed
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• Fixed a couple of bugs that impacted Casava 1.4 formatted read id

  mgarber

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Commits on Jun 16, 2015

• Adjusted code to use Casava's read ID specification for barcode storage

  mgarber

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Commits on Mar 5, 2015

• Reverting to Manuel's modified version (that I somehow overwrote...)

  

  derra

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Commits on Feb 26, 2015

• Modified handling of multimappers for "proper" multimapper handling.

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Commits on Feb 3, 2015

• Merge remote-tracking branch 'ESAT/master'

  

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Commits on Jan 29, 2015

• Proper handling of multimappers

  

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Commits on Jan 9, 2015

• Added "proper" handling of multimapped reads. For now, this is an

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Commits on Jan 8, 2015

• removed web.tgz. Should have never been checked in

  mgarber

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Commits on Jan 7, 2015

• Fixed loadBamFileList() function to use any whitespace (or multiple

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  derra

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• Fixes incorrect .window file output.

  

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Commits on Dec 9, 2014

• Added pre-processing of alignment files based on Nextera library prep.

  

  derra

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• Fixed a minor bug with the barcode pattern parsing.

  

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Commits on Nov 25, 2014

• Moved loading of transcript mapping files to before first-pass read of

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• Web page files

  

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