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def count_nonzero_voxels (img ):
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"""
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Count number of non-zero voxels
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Parameters
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----------
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img : ``SpatialImage``
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All voxels of the mask should be of value 1, background should have value 0.
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Returns
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-------
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- non zero voxel volume : int
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+ count : int
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Number of non-zero voxels
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"""
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return np .count_nonzero (img .dataobj )
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def mask_volume (img ):
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""" Compute volume of mask image.
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Equivalent to "fslstats /path/file.nii -V"
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Parameters
@@ -41,7 +43,7 @@ def mask_volume(img):
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Returns
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-------
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- mask_volume_mm3 : float
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+ volume : float
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Volume of mask expressed in mm3.
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Examples
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from .. import imagestats
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from .. import Nifti1Image
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- import pytest
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def test_mask_volume ():
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# Test mask volume computation
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assert vol_mm3 == 1000.0
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assert vol_vox == 1000
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