bioinformatics-toolkit-0.10.0: A collection of bioinformatics tools

Safe Haskell	None
Language	Haskell2010

Bio.RealWorld.ENCODE

Contents

common search
specific search
Inspection
printing

Synopsis

data KeyWords = KeyWords (Seq String) (Seq String)
search :: KeyWords -> IO (Either String [Value])
terms :: [String] -> KeyWords
cellIs :: String -> KeyWords
organismIs :: String -> KeyWords
assayIs :: String -> KeyWords
getFile :: FilePath -> String -> IO ()
queryById :: EncodeAcc -> IO (Either String Value)
openUrl :: String -> String -> IO ByteString
jsonFromUrl :: String -> IO (Either String Value)
(|@) :: Value -> Text -> Value
(|!) :: Value -> Int -> Value
as :: FromJSON a => Value -> a
(&) :: a -> (a -> b) -> b
showResult :: Value -> IO ()

Documentation

data KeyWords Source #

Terms and constraints.

Constructors

KeyWords (Seq String) (Seq String)

Instances

Instances details

Show KeyWords Source #
Instance details Defined in Bio.RealWorld.ENCODE Methods showsPrec :: Int -> KeyWords -> ShowS # show :: KeyWords -> String # showList :: [KeyWords] -> ShowS #
Semigroup KeyWords Source #
Instance details Defined in Bio.RealWorld.ENCODE Methods (<>) :: KeyWords -> KeyWords -> KeyWords # sconcat :: NonEmpty KeyWords -> KeyWords # stimes :: Integral b => b -> KeyWords -> KeyWords #
Default KeyWords Source #
Instance details Defined in Bio.RealWorld.ENCODE Methods def :: KeyWords #

search :: KeyWords -> IO (Either String [Value]) Source #

general search using keywords and a set of constraints. Example: search ["chip", "sp1"] ["type=experiment"]

common search

terms :: [String] -> KeyWords Source #

cellIs :: String -> KeyWords Source #

organismIs :: String -> KeyWords Source #

assayIs :: String -> KeyWords Source #

specific search

getFile :: FilePath -> String -> IO () Source #

queryById :: EncodeAcc -> IO (Either String Value) Source #

accession

openUrl :: String -> String -> IO ByteString Source #

jsonFromUrl :: String -> IO (Either String Value) Source #

Inspection

(|@) :: Value -> Text -> Value Source #

(|!) :: Value -> Int -> Value Source #

as :: FromJSON a => Value -> a Source #

(&) :: a -> (a -> b) -> b Source #

printing

showResult :: Value -> IO () Source #