modify-fasta-0.8.3.0: Modify fasta (and CLIP) files in several optional ways

Safe HaskellSafe
LanguageHaskell98

Types

Documentation

data GeneticUnit Source #

Constructors

AminoAcid 
Nucleotide 

Instances

data FrameType Source #

Constructors

InFrame 
OutFrame 

Instances

type ID = Int Source #

type Codon = Text Source #

type CodonMut = Int Source #

type Field = Int Source #

type Start = Int Source #

type Stop = Int Source #

type Position = Int Source #

type Frame = Int Source #

type CloneEntry = (Germline, [FastaSequence]) Source #

type FillInValue = (Field, Start, Char) Source #

type CodonTable = [(Text, Char)] Source #

type Mutation = (Char, Char) Source #

type CountMap = Map (Position, Mutation) Int Source #

type CodonMutations = [[(Position, Mutation)]] Source #