Open Source Unix Shell Bio-Informatics Software
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Unix Shell Bio-Informatics Software
View 59 business solutionsBrowse free open source Unix Shell Bio-Informatics Software and projects below. Use the toggles on the left to filter open source Unix Shell Bio-Informatics Software by OS, license, language, programming language, and project status.
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ProtPOS
Prediction of PROTtein Preferred Orientation on a Surface
ProtPOS is a self-contained, lightweight, and easy-to-use software package for predicting the preferred orientation of protein on a given surface upon initial adsorption. It searches quickly for the low energy protein poses in all translational and rotational degrees of freedom of the protein with respect to the surface using particle swarm optimization. Each successful run returns the lowest energy orientation of the protein on the surface in PDB format, which is readily used for MD simulations. ProtPOS is implemented in Python, making use of the PyMOL library for generating protein conformations and calling GROMACS externally to calculate protein-surface interaction energies. https://cbbio.online/software/protpos/
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