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As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site.
Javacode developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/)
More details and documentation can be found on the wiki:
http...
PyUnit and PyDev extensions for arbitrary Executables
The package 'epyunit' provides extensions for PyUnit and PyDev.
* Extensions for PyUnit - Unittests for arbitrary executables.
* Extensions for PyDev - Automation of search and load of pydevd.py
The extensions are applicable from commandline and/or within Eclipse.
Online manuals:
- https://pythonhosted.org/epyunit/
PyPi repository:
- https://pypi.python.org/pypi/epyunit
Current application examples are:
- bash-core - http://bash-core.sourceforge.net
Nickname -...
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This project aims to develop software around FW4EX, an infrastructure for mechanized grading. Currently five sub-projects exist: a C client for SCiTE, two Java clients for Eclipse and two authoring plugins for Eclipse. And, now, a pair-programming server.
This project aims the requirement of managed informations / documents in the treatment of patients, i.e. integrated care. The underlaying data model implements standards of electronic health recording, the project is based on a SQL db and Java EE framework. This is currently a student driven project for educational purposes.
This project aims to build a suite of Natural Language Processing tools. Modules will include corpus indexing and access tools, a part-of-speech tagger, tokenisers, text classification software, etc.
This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text.
The method is based on SVM but other ML algorithms can be adopted. The method details are explained...
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VisualCamel is a WYSIWYG Graphical Perl/Tk GUI creator. VisualCamel is an attempt to create a Perl/Tk GUI editor that resembles Microsoft's Visual Basic.
OpenBrain is an AIML interpreter/terminal hybrid. It's intended use right now is sort of a desktop assistant, designed to speak in your language instead of system shell code. The Project is still being developed so it isn't that intelligent quite yet.
DKU is an embedded parallel language, or "piggy-back" language that uses function calls to invoke the language's execution model. It tunes task-size to the hardware while hiding hardware details for high performance portability of parallel code.
Hardware Simulation and Vitualization Environment: Unfortunately I have lost my sourcecode in a freak accident (My roommate dropped a bed onto my laptop) for this project. Please be patient and visit http://devsoft.ath.cx/crisis for more information.
Programmers love to add "todo" notes to the code, where they remain hidden. Todoler is a simple Perl script that parses any text file extracting all "todo"s and placing them into a XML file for import into project management tools.
Foo Test is a small, fast C-function unit testing project. It is capable of both benchmarking and validating C-functions while writing most of the test code through an easy perl script, and all the developer needed code can be added to a single file.
MyJQuery is an operating system independent database utility written entirely in Java, for beginners MySQL 5.1+ Database & students.
Generating Perl,Perl/CGI,PHP,Java,JSP Code Snippet & export CSV,HTML,XML
execute any MySQL statement
Emergency Context Resolution with Internet Technologies
The project is based on a draft from files draft-ietf-ecrit-*
Developed by IETF ECRIT Working Group
Project Naranja will uses Padlock Security of VIA EPIA mini-ITX motherboards in order to provide a toolkit to set up and use encrypted filesystems with Linux. NOTE: Files are now hosted at Google Code: http://code.google.com/p/naranja/
PerlBB (Perl Bulletin Board) is an attempt to create a feature rich and fully scaleable forum / blog host system that requires no additional database support. The main project goals are efficiency / performance and ease of code extension.
W2g is a framework for building web-based applications such as online databases, intranet portals or CRM systems. It has a object-oriented design and includes a session management, a template engine and a persistency engine based on Apache and MySQL.
This is a collection of utilities for use with the RTG SNMP poller. Currently, the software and documentation of this project is highly specific to my own implementation and network. I hope to generalize this software over time.
PSIMAP is the Protein Structural Interactome MAP, a map of all the domain level protein-protein interactions in the Protein Data Bank (PDB). PSIsoft is an archive of the software used to generate and analyse PSIMAP.
OSIOSS (Open Source Integrated Observing System Software) is a collection of code which can be used for geospatial observing systems merging data collection, management and products solutions with ocean observing systems (OOS) as an initial focus.
The SERF Tools are programs and snippets of code made to speed-up and ease development. Most of these programs were written as proof-of-concept but have proven useful at least twice.