Search Results for "data analysis"
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Showing 43 open source projects for "data analysis"
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Data Preprocessing Automate
Data Preprocessing Automation: A GUI for easy data cleaning & visualiz
Data Preprocessing Automation is a Python-based GUI application designed to simplify and automate data preprocessing tasks. It allows users to upload Excel files, automatically handle missing values, remove duplicates, and detect and remove outliers using statistical methods. The application provides data visualization tools, including box plots for distribution analysis and scatter plots for exploring relationships between variables. -
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miRge3
Comprehensive analysis of small RNA sequencing data
An update to Python package to perform comprehensive analysis of small RNA sequencing data, including miRNA annotation, A-to-I editing, novel miRNA detection, isomiR analysis, visualization through IGV, processing Unique Molecular Identifieres (UMI), tRF detection and producing interactive graphical output. miRge3.0 is developed in python v3.8 and is a recent update of our previous version miRge2.0. -
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SMILI
Scientific Visualisation Made Easy
The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with... -
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hui
hewies user interface - 3D scientific visualisation tool
Python project with goal to provide FOSS library to extract, analyse and visualise data in a 3D fashion. The instance will connect to a data source, ods sheet, csv, sql DB, pyodbc the instance will analyse and/or transform the data to be presented to the visualisation functionality the instance will visualise the data in a 3D fashion, likely using third party FOSS -
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AICtools
Workflow and set of tools for Automated Imagery Classification
AICtools is a GIS workflow and set of tools to facilitate Automated Imagery Classification (AIC) and analysis of surface features over time. Allows bulk processing of large data sets, including automated metadata processing/filtering, compressed archive extraction and file manipulation, raster band compositing, pre-processing, mosaicking, clipping. Automates a subset of operations involved in classification of satellite imagery and the associated raster calculations used for time trend analysis. -
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The TRANSIMS Studio application is an integrated development environment for the TRansportation ANalysis and SIMulation System (TRANSIMS). Components include a run time environment to execute TRANSIMS in parallel, as well as a full featured GUI.
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FOSS license
FOSS license and sentence token
We propose a method to mark the comments of license as sentence-token. We use the term sentence-token to refer to a sentence of a known license. A license (both by-inclusion or by-reference) is a sequence of sentence-tokens. Sentence-tokens are generalized using one or more regular expressions. we propose an idea for license identification based on the analysis of each sentence in the license statement of a source code file. -
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dadosSemiotica
Collecter and manager of semiotica annalisis data
This program is a web application to collect and organize data of text analysis. It works with sets of texts and the analysis are done on portions of the length of a sentence. One of the preprocessing modules is based on CoGroo (A LibreOffice & OpenOffice.org Portuguese Grammar Checker). -
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The purpose of the current project is the development of a potentially open-source platform that would provide the capability to conduct virtual bioequivalence trial simulations. Ideally, this user-friendly platform will provide the user with many user-defined capabilities. Algorithm implementation for population pharmacokinetic analysis: The current project describes the marriage between PBPK modeling and population-based statistical analysis. The latter is necessary for parameter estimation when individual-level data is available. A critical aspect of this coupling is the implementation of an algorithm that would allow the performance of population-based statistical analysis. ...
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survol
RDF-based framework monitoring business systems activity
A Python agent and a web interface aiming to help the analysis and investigation of a legacy application. A set of machines, processes, databases, programs etc ... all communicating with each other, manipulating your data, and whose software architecture has become, with time, complicated, difficult to understand, and undocumented. Data are aggregated with an RDF inference engine, creating a global vision of the business information processing. -
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ELINT Alchemist
Plot, analyse and measure ELINT Time-Based data.
This program will open an ELINT Time-Based Data (TBD) file and plot it for purposes of measurement and analysis. Test files included. New ver 0.4 added 2018-01-01. -
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X-SOCS
X-ray Strain Orientation Calculation Software
The X-ray Strain Orientation Calculation Software (X-SOCS) is a user-friendly software, developed for automatic analysisof 5D sets of data recorded during continuous mapping measurements. X-SOCS aims at retrieving strain and tilt maps of nanostructures, films, surfaces or even embedded structures. For more information: http://scripts.iucr.org/cgi-bin/paper?S1600576714004506 To download the latest version of XSOCS (D. Naudet, T. Vincent, M.I. Richard, G. Chahine), follow the instruction in the following link: https://gitlab.esrf.fr/kmap/xsocs You can find on youtube video tutorials explaining the main steps to follow for a standard KMAP data analysis. ... -
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P3BSseq
Parallel processing pipeline for analysis of bisulfite sequencing data
Bisulfite sequencing (BSseq) processing is among the most cumbersome next generation sequencing (NGS) applications. Though some BSseq processing tools are available, they are scattered, require puzzling parameters and are running-time and memory-usage demanding. We have developed P3BSseq, a parallel processing pipeline for fast, accurate and automatic analysis of BSseq reads that trims, aligns, annotates, records the intermediate results, performs bisulfite conversion quality assessment,... -
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Copy Number Analysis for Targeted Resequencing (CONTRA) is a tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.
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scipion-xmipp
Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated... -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting... -
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ThermV
Comprehensive thermal analysis software package
ThermV thermal analysis software package aims to provide the most sophisticated automatic analysis of thermal analysis data (TG/DTG, DTA and DSC). It offers new algorithm for concurrent peak deconvolution at different heating rates and provides full kinetic analysis of these data, including isoconversional methods for Ea, determination of reaction model and full kinetic triplet, Avrami coefficients, and dimensionality of crystal growth for reactions in the solid state. ... -
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SnowMicroPyn
Python based reader for SnowMicroPen® .pnt measurements
SnowMicroPyn is an opensource reader for SnowMicroPen® files in binary .pnt format. The reader is Python based and published as source code as well as compiled executable for Windows, Linux and Mac. The software is preliminary, thus please report bugs. For further information, please read the Readme.txt in the download section. The SnowMicroPen® (SMP) is developed by the WSL Institute for Snow and Avalanche Research, Davos. The SMP is the first high-resolution snow penetrometer. It is... -
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RDS Surveyor is an RDS/RBDS decoding, monitoring and analysis tool and library. It has migrated to GitHub: https://github.com/ChristopheJacquet/RdsSurveyor/
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Pyphant is a framework for scientific data analysis. It features a flexible plugin architecture allowing for the application in many different fields. For the analysis a graph of processing steps is constructed, that can be applied via the cli as well.
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allink
Software for data analysis, image processing, simulations, solver.
Collection of utilities based on two basics classes: Matematica and VarData. Matematica) performs math operations on vectors and matrices for smoothing, interpolation, convolution, image processing... VarData) manipulate a structure of points connected by links. Addraw) openGL engine. ElPoly) analyze mechanical properties of polymer and membrane like structures. Addyn) perform molecular dynamics and Monte Carlo simulations and has a solver for 4th oder PDE. Avvis) perform all the... -
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GUI for DEDA
GUI for DEmography Data Analysis
<This project has been completely rewrote and transformed into a new one: https://sourceforge.net/projects/deday/. 2013/06/26> The graphic user interface for DEDA (DEmography Data Analysis), a scientific software package fitting survivalship data to a number of distributions using maximum likelihood (ML) method. Currently, Weibull (2p), Gompertz and Gompertz-Makeham are supported. IMPORTANT NOTICE: Only the GUI is provided here. In order to perform the analysis, one also need the DEDA computation core program. ... -
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ROOTlib
C++ lib, that provides access to multiple ROOT routines (root.cern.ch)
This C++ lib is used and created to provide easy methods based on ROOT (a CERN data analysis framework). It was developed for use in practical courses but is not limited to. In addition it is ported step by step into Python. -
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pygolem
Python API for the GOLEM Tokamak discharge database
This simple Python API aims to provide a simple and easy to understand access to the discharge database of the GOLEM Tokamak. The scipy, numpy and matplotlib Python libraries are used for data analysis and plotting. -
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This project aims to be a easy-to-use toolkit of algorithms and utilities for semantic data mining. So far all algorithms are implemented as web services and we provide widgets for their use in the Orange4WS data mining platform.
