Search Results for "pyscripter python 2" - Page 4
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Showing 328 open source projects for "pyscripter python 2"
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openSEQ
NGS compute distro proloaded with pipeline analysis software
.... The first homepage tab links to our pipeline constructer. The second homepage tab links to a xterm session on the client. Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk -
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GnuVet
Open Source Vet Practice Management
Veterinary Practice Management program for management, documentation, accounting etc. in the veterinary practice. Easy to use, intuitive structure. python + PyQt4, postgres database as storage engine. PRE-ALPHA! -
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UniPyRange
Tool to fetch protein/DNA truncation constructs from Uniprot DB
Very simple python script which saves you the pains of counting the amino acids/DNA bases in fasta files from the Uniprot and NCBI RefSeq Database (1, 2). Lets say you want the amino acid sequence of range 128-387 from a 1000 amino acid protein - this script will help you to avoid counting mistakes by just showing you the specified sequence in amino acids and coding DNA base pairs (ideal for amplification primer design) of a specified Uniprot ID. - Requires BioPython (3) and Bioservices... -
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Malware Analysis Network in Taiwan
MAN in Taiwan, MiT
Malware Analysis Network in Taiwan <Man in Taiwan, MiT> Welcome to contact us (TonTon@TWMAN.ORG) if you are interested in collaborating with us. This project is open source and distributed under the GNU General Public License version 3. Please feel free to add to or modify this source and propose changes or new converters. Developer & Copyrighted by : TonTon Hsien-De Huang Prompter: Jazz Yao-Tsung Wang, Figaro Chen-Ho Yang | Logo Desinger:Temaki Guo Community on... -
MongoDB Atlas | Run databases anywhereMongoDB Atlas allows you to build and run modern applications across 125+ cloud regions, spanning AWS, Azure, and Google Cloud. Its multi-cloud clusters enable seamless data distribution and automated failover between cloud providers, ensuring high availability and flexibility without added complexity.
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MDcons(Molecular Dynamics consensus)
Interpretation of Biomolecular MD simulations
MDcons is a tool to analyze conserved contacts during Molecular Dynamics (MD) simulations of Protein, Rna, Dna & Ligand based complexes. The input is either a Molecular Dynamics trajectory or a set of snapshots. The input can also be a single snapshot. The outputs are (1) map of most/less frequently conserved contacts during MD (2) a list of most/less frequently conserved contacts during MD. -
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LWPR
Locally Weighted Projection Regression (LWPR)
..., Aaron D'Souza and Stefan Schaal, Incremental Online Learning in High Dimensions, Neural Computation, vol. 17, no. 12, pp. 2602-2634 (2005). [2] Stefan Klanke, Sethu Vijayakumar and Stefan Schaal, A Library for Locally Weighted Projection Regression, Journal of Machine Learning Research (JMLR), vol. 9, pp. 623--626 (2008). More details and usage guidelines on the code website. -
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Data logger, manipulator and visualizer. Receives data in CSV format from stdio.
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mitoMaker
mitoMaker - a mitochondria assembly and annotation script
... a target mitochondrial genome given. 2-searches for all mitochondrial gene features and circularization. 3-stores the best result found. 4-uses the best assembly as backbone for a reference based assembly, using MIRA and MITObim, trying to extend the mitogenome and close gaps. 5-annotates the best assembly, identifying the start and end position of each and every feature. 6-creates a folder with all the results (PNG, GENBANK, FASTA, SEQUIN, CAF, MAF and a stats logfile). -
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Raysect Python Raytracing Framework
A raytracing framework for optical/non-optical physics simulations
This project has migrated to github: https://github.com/raysect -
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Magnolya
De novo CNV detection by co-assembly
Magnolya enables copy number variation (CNV) detections without using a reference genome. Magnolya directly compares two next-generation sequencing datasets. -
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walterbot
walterbot: Virtual presence device www controlled with a raspberrypy
walterbot è un "virtual presence device" controllabile da remoto via interfaccia web. La distro Debian per architettura ARMhf6 è stata ottimizzata per "Raspberrypi B rev2". Il codice python scritto da Walter, controlla 2 motori DC tramite un TB6612FNG https://github.com/InformaticiTarantini/Pi-dro La distro è "out of the box" basta clonare l'immagine su una SD card (minimo 2Gb) proprio come si fa con raspbian. Tramite accesso ssh o direttamente dal raspberrypi, eseguire il comando "sudo... -
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SAMoCAD
Simple CAD program
SAMoCAD - its program to create simple drawings, partially supports DXF. Main features: - create simple objects (line, arc, circle) - create complex objects (text, dimensions) - edit drawn objects - save drawing to SVG format - output drawing in PostScript format - export/import content DXF files (primitives LINE, CIRCLE, ARC, TEXT, DIMENSION) Program written in Python 2 and use the library Tkinter. Program requires no installation, but you need install Python 2.7 or later on your... -
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Advanced Numerical Instruments 2D
Advanced numerical instruments: adaptive meshing, FE methods, solvers
Ani2D provides portable libraries for each step in the numerical solution of systems of PDEs with variable tensorial coefficients: (1) unstructured adaptive mesh generation, (2) metric-based mesh adaptation, (3) finite element discretization and interpolation, (4) algebraic solvers. -
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This project is writen in python and is a result of a school project with the goal to be able to simulate and determin interplanetary orbits. The goal of the project was to design a Voyager like mission in the present hence the name, Voyager Generation 2
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wiki export tool
A tool for exporting Wikipedia data
A simple tool, created in a French project "CoMeRe", for exporting data from all Wikimedia fundation projects, include Wikipedia. To use this, you need prepare two things: Target dump of Wiki Target page name Then, configure the tool with dump path and input the page name, finally just let's it run, you will get the target page. Duration is dependent on size of the dump, and the number of pages. Take care for using option "talk, other talk...", this is now only for french corpora. -
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MRA
A general recommender system with basic models and MRA
Multi-categorization Recommendation Adjusting (MRA) is to optimize the results of recommendation based on traditional(basic) recommendation models, through introducing objective category information and taking use of the feature that users always get the habits of preferring certain categories. Besides this, there are two advantages of this improved model: 1) it can be easily applied to any kind of existing recommendation models. And 2) a controller is set in this improved model to provide... -
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EducationalLCS
eLCS - Educational Learning Classifier System
Educational Learning Classifier System (eLCS) is a set of learning classifier system (LCS) educational demos designed to introduce students or researchers to the basics of a modern Michigan-style LCS algorithm. This eLCS package includes 5 different implementations of a basic LCS algorithm, as part of a 6 stage set of demos that will be paired with the first introductory LCS textbook. Each eLCS implementations (from demo 2 up to demo 6) progressively add major components of the entire LCS... -
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SocExplorer
SocExplorer, an open source System On Chip testing software/framework.
... his set of plugins to handle a new SOC or just a new peripheral. SocExplorer uses PythonQt to allow user to automate some tasks such as loading some plugins, configuring them and talking with his device. SocExplorer is provided under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. -
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Scientific data elaborator
The data elaborator is a new project to manage scientific data
This program can make histograms, table and graphics of datas, study the error propagation during a measure, it is usefull if you have to do study errors propagations. The output are latex files, so it is easy for you just put them into your relations. -
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ActiveFolder
ActiveFolder can be integrated with existed scientific computation.
Welcome to the ActiveFolder project, the open source for management simulataion data and reproducing. ActiveFolder provide data reproduction for comparative study and searching reproduction data, by storing data coupled with provenance information. ActiveFolder is integrated existed grid computing service and cloud services. And also, ActiveFolder can be integrated with existed scientific computation, analysis and visualization software without modification. -
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FineSplice
Enhanced splice junction detection and estimation from RNA-Seq data
...-supervised anomaly detection strategy based on logistic regression. Multiple mapping reads with a unique location after filtering are rescued and reallocated to the most reliable candidate location. FineSplice requires Python 2.x (>= 2.6) with the following modules installed: pysam (http://code.google.com/p/pysam/) and scikit-learn (http://scikit-learn.org/). For further details check out our publication: Nucl. Acids Res. (2014) doi: 10.1093/nar/gku166 -
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"gtdev" is an open source tool which assists the engineer in developing a new gas turbine (1D Thermo- and Aerodynamics). It is created by the student research group "Hummingbird - TUM Gas Turbines" placed at the LFA, TU Munich: http://www.hummingbird.tum.de
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allink
Software for data analysis, image processing, simulations, solver.
Collection of utilities based on two basics classes: Matematica and VarData. Matematica) performs math operations on vectors and matrices for smoothing, interpolation, convolution, image processing... VarData) manipulate a structure of points connected by links. Addraw) openGL engine. ElPoly) analyze mechanical properties of polymer and membrane like structures. Addyn) perform molecular dynamics and Monte Carlo simulations and has a solver for 4th oder PDE. Avvis) perform all... -
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Automatic Compound Processing (AuCoPro)
Automatic compound splitting and semantic analysis of compounds
... analysis of compounds; as such, the project will be divided into two interrelated subprojects, to be executed simultaneously. The focus in this project will be on Afrikaans (with Dutch as the closely-related, well-sourced language), which will lay grounds for future work on other closely-related language pairs.
