Search Results for "data analysis"
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Showing 55 open source projects for "data analysis"
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Airborne Data Processing and Analysis
Software to processing and analyze of airborne measurements.
The Airborne Data Processing and Analysis (ADPAA) package is an open-source software package containing a collection of programs and scripts to process and analyze data from in-situ instruments deployed on airborne platforms. The ADPAA package was started to process data on the North Dakota Citation Research Aircraft but has been used to process data on many airborne platforms. -
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BinExport
Export disassemblies into Protocol Buffers
BinExport is a disassembly export plugin developed by Google as part of the BinDiff ecosystem, designed for reverse engineering and binary analysis. It works with popular disassemblers including IDA Pro, Binary Ninja, and Ghidra, enabling the export of disassembly data into a structured Protocol Buffer format. This exported data can then be used for binary comparison, diffing, and advanced analysis tasks through BinDiff or other compatible tools. BinExport captures detailed information such as instructions, functions, control flow graphs, and metadata, providing a machine-readable representation of a program’s disassembled structure. ... -
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OSV.dev
Open source vulnerability DB and triage service
...This repository contains the full infrastructure code for deploying osv.dev on Google Cloud Platform, including Terraform configurations, APIs, data pipelines, indexers, and background workers for vulnerability ingestion and impact analysis. It also integrates with automated feeds from sources like NVD and OSS-Fuzz, enabling continuous updates and high data accuracy. -
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Seeker
Accurately Locate Smartphones using Social Engineering
Seeker is an open source project that demonstrates how to obtain precise location information from devices using social engineering and web-based techniques. The tool sets up a phishing page that asks for location permissions, allowing GPS and other device data to be shared if the user consents. It can capture latitude, longitude, accuracy, altitude, direction, and even speed, with results displayed in a terminal. The project supports both manual deployment and tunneling services like Ngrok... -
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OpenTelemetry Collector distributions
OpenTelemetry Collector Official Releases
High-quality, ubiquitous, and portable telemetry to enable effective observability. OpenTelemetry is a collection of APIs, SDKs, and tools. Use it to instrument, generate, collect, and export telemetry data (metrics, logs, and traces) to help you analyze your software’s performance and behavior. Create and collect telemetry from your services and software, then forward it to a variety of analysis tools. OpenTelemetry integrates with many popular libraries and frameworks, and supports code-based and zero-code instrumentation. -
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CodeGuide
This repository is a collection of the author, Xiao Fuge
CodeGuide is a curated collection of Java development resources built from years of real-world engineering experience by the author, who has worked extensively in large-scale internet companies. The project serves as a structured and comprehensive learning path for developers who want to strengthen their understanding of Java fundamentals and core programming practices. It includes detailed explanations of design patterns, source code analysis, frameworks, algorithms, and real-world project... -
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Kubernetes Handbook
Cloud native application architecture practice handbook
Cloud native is a behavioral method and design concept. In its essence, all behaviors or methods that can improve resource utilization and application delivery efficiency on the cloud are cloud-native. The history of cloud computing is a history of cloud native. Kubernetes opened the prelude to cloud native 1.0. The emergence of service mesh Istio led to microservices in the post-Kubernetes era. The rise of serverless has enabled cloud native to advance from the infrastructure layer to the... -
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Ubix Linux
The Pocket Datalab
Ubix stands for Universal Business Intelligence Computing System. Ubix Linux is an open-source, Debian-based Linux distribution geared towards data acquisition, transformation, analysis and presentation. Ubix Linux purpose is to offer a tiny but versatile datalab. Ubix Linux is easily accessible, resource-efficient and completely portable on a simple USB key. Ubix Linux is a perfect toolset for learning data analysis and artificial intelligence basics on small to medium datasets. ... -
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xsd2pgschema
Relational database replication tool based on XML Schema
...Obtained PostgreSQL database can be optimized at user's discretion. Moreover, differential update, and XPath query evaluation over PostgreSQL are possible. PgSchema server, serialized relational data model server, can be used to speed up the analysis of complex XML Schema. Large XML file can be split through xmlsplitter, a flexible XML splitter based on XPath and StAX. -
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MAF
Bash Framework to combine many preprocessing and alignment tools
...The presented multi-alignment framework (MAF) should give researchers a simple sequence alignment platform as a functional template, flexible enough to adjust all steps but also comprehensive enough to join many different tools and custom parameter combinations if in-depth analysis is necessary or advised in e.g. low read rate situations. The platform enables researcher to apply multiple sequence aligners and further pre- and postprocessing tools in flexible combinations to analyze the subtle to remarkable differences between different sequence alignment and processing algorithms applied to the same data basis. ... -
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openSkyMatch
Matches OpenScience Observatories images with astronomical catalogs
openSkyMatch is a collection of Linux shell and Python scripts designed for the OpenScience Observatories program. It automates the identification and matching of detected celestial objects in locally captured FITS images with entries in large-scale sky catalogs, notably Pan-STARRS1 DR2 (II/389/ps1_dr2). The toolkit supports data preprocessing, coordinate correlation, and catalog-based validation of astronomical detections. All tools are open-source and optimized for reproducibility and... -
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MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
MToolBox is a highly automated bioinformatics pipeline to reconstruct and analyze human mitochondrial DNA from high throughput sequencing data. MToolBox includes an updated computational strategy to assemble mitochondrial genomes from Whole Exome and/or Genome Sequencing (PMID: 22669646) and an improved fragment-classify tool (PMID:22139932) for haplogroup assignment, functional and prioritization analysis of mitochondrial variants. MToolBox provides pathogenicity scores, profiles of genome variability and disease-associations for mitochondrial variants. ... -
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AICtools
Workflow and set of tools for Automated Imagery Classification
AICtools is a GIS workflow and set of tools to facilitate Automated Imagery Classification (AIC) and analysis of surface features over time. Allows bulk processing of large data sets, including automated metadata processing/filtering, compressed archive extraction and file manipulation, raster band compositing, pre-processing, mosaicking, clipping. Automates a subset of operations involved in classification of satellite imagery and the associated raster calculations used for time trend analysis. -
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LaTeX Reference Card Creator
A Makefile based build system for creating LaTeX reference cards
LaTeX Reference Card Creator is a Makefile based build system for creating reference cards. LaTeX Reference Card Creator compiles content into PDF, DjVu, TEX DVI, HTML and PostScript output formats. A three column reference card will be created. Features include batch image format conversions, spell checking, broken link checking, automatic backups and .zip and .tar.gz distribution building. LaTeX Reference Card Creator provides many LaTeX examples which can be used to make a reference card. -
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Sagacity
Security Assessment Data Management and Analysis Tool
We have migrated development of Sagacity to GitHub at https://github.com/cyberperspectives/sagacity Sagacity is a vulnerability assessment and STIG compliance data management tool designed to make security testing more efficient, effective and complete. Security assessments, especially those done for DoD and Federal organizations, produce tremendous amounts of scan and compliance data that security engineers must sort through and deconflict, identify untested requirements, and somehow... -
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lr2rmats
Long read to rMATS
lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis. More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/ -
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SPANDx
Comparative analysis of haploid next-generation genome sequence data
SPANDx is your one-stop tool for identifying SNP and indel variants in haploid genomes using NGS data. SPANDx performs alignment of raw NGS reads against your chosen reference genome or pan-genome, followed by accurate variant calling and annotation, and locus presence/absence determination. SPANDx produces SNP and indel matrices for downstream phylogenetic analyses. Annotated, genome-wide SNPs and indels can also be identified if specified, and are output in human readable format. A... -
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Cress Tool Suite
Cress is a comprehensive toolset for graphical service/workflow design
Cress (Communication Representation Employing Systematic Specification) allows graphical description of a wide variety of services such as in data communications/telecommunications, but Cress is not limited to this. The approach allows services to be described graphically as (work)flows of activities. Cress diagrams are automatically translated into formal languages for rigorous analysis and verification, and are also automatically translated into implementation languages for deployment and validation. ... -
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MCCCS
Multi Channel Classification and Clustering
Here we present an image-based Multi Channel Classification and Clustering System (MCCCS). It is an generalized, script-based classification system for processing various kinds of image data. Due to the modular design, individual processing-components can be easily adapted, extended or exchanged by own extensions. See project website for installation instructions. -
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in "Files" section) ############# GitHub : https://github.com/jbrayet/ncpro-seq -
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LaTeX Web Publisher
LaTeX Web Publisher is a Makefile based Web publishing system
LaTeX Web Publisher is a Makefile based Web publishing system featuring content creation into HTML, non-split HTML, HTML Zip, PDF, DjVu, PostScript, DVI and Plain text formats. All LaTeX Web Publisher output formats are from a single LaTeX source and have indices. LaTeX Web Publisher can be used for website creation and has FTP deployment capabilities. A website created with LaTeX Web Publisher will have HTML, non-split HTML and PDF content formats. The website will have complete HTML... -
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic, sequence variation, and expression datasets is now available. Please visit the Cloudomics, project for cloud-based resources: https://sourceforge.net/projects/cloudomics-for-aws/ -
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BAIO
Bioinformatics Artificial Intelligence Order
A smart interface of AI that will interrogate and complete your bioinformatics data analysis for you. Download and start your instance of BAIO to join the network of great bioinformatics Minds. -
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Ymap - Yeast Mapping Analysis Pipeline
Pipeline for large-scale genome changes analysis of genome datasets.
...The YMAP pipeline automatically illustrates genome-wide information in a single intuitive figure and is readily modified for the analysis of other categories of data and other pathogen species with small genomes. -
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QUASI is a toolkit to rapidly assess the quality of shRNA-Seq based data and call differential abundance using common statistical inference methods (DESeq, edgeR, baySeq).
