Open Source PL/SQL Bio-Informatics Software for Linux

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PL/SQL Bio-Informatics Software for Linux

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Browse free open source PL/SQL Bio-Informatics Software for Linux and projects below. Use the toggles on the left to filter open source PL/SQL Bio-Informatics Software for Linux by OS, license, language, programming language, and project status.

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    CpDB

    Relational database schema and tools for bacterial genome annotation

    This software allows us to create a relational database in PostgreSQL hosting full bacterial genomes. Besides the database, there is software, like a parser, to convert EMBL or GBK files to the CpDB relational schema. Once in the CpDB, one can extract unlimited reports from bacterial genomes using SQL. This software is part of the Ph.D. in Bioinformatics from Anderson Santos (https://orcid.org/0000-0003-3418-0823) developed under the Corynebacterium pseudotuberculosis (Cp) pangenome project. The Cp pangenome delivered to the scientific community fifteen bacterial strains deposited at the GenBank database between the years of 2009 and 2012. The thesis was written in Brazilian Portuguese. However, an English book chapter explaining the software is available at this address: https://doi.org/10.5772/23724. CpDB is the backbone for the Pannotator software: https://pannotator.facom.ufu.br. Both software still is alive and kicking. Enjoy it.
    1 Review
    Downloads: 1 This Week
    Last Update:
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