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Binding site descriptor generation for SVM based classification.
A set of java programs that extract coordinate and chemical information from PDB files.
The binding site regions are extracted using grid based scheme.
For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too).
iTclC is a framework for [incr Tcl]. It makes Itcl more flexible.
Provides: memory management and mechanisms for creating user interfaces. Not yet suitable for developing professional applications with - of course it is a very basic framework.
MeMo (stands for Meta-Model) is planned as Generic Programming Language & IDE, as flexible & smart as it is possible for computer application, including adjustable syntax, algorithm reduction. Ideally, it has to contain AI for interacting with the user.
A human-readable ISC-Licensed implementation of the LZO1X algorithm.
...The main problem with LZO is that it is absolutely not human readable.
People have done crazy stuff to get LZO to run in their language. Usually it implies inline assembly or trying to execute data which actually contains machine code. This is sick. Whoever is responsible for this sorry situation ought to be ashamed.
So I'm going to deobfuscate LZO and provide a ISC implementation of this algorithm in Python and C. In addition, I will provide a textual description of the algorithm so that it can be easily ported to any programming language.
I expect a severe performance degradation, but I leave optimizing for speed to other people.