Open Source Python Data Visualization Software - Page 12

program which solves the poisson problem using multigrid and finite elements

The VR Juggler Toolbox is a collection of libraries and tools for use with VR Juggler applications.

A python package which aids in the analysis of ViEWER (http://www.webpages.uidaho.edu/~bdyre/viewer.htm) epoch logs. A wxPython GUI helps the user build a python script which uses the package to perform timeseries and spectral analyses.

Vibeplot presents a new and attractive way to visualize vibrational analysis from density functional calculations (DFT). It is especially targeted at the chemists. The interface can either be scripted or used interactively with QVibeplot.

VisAD is a Java component library for interactive and collaborative visualization and analysis of numerical data.

Vispy is an open-source, high-performance interactive visualization library in Python, designed for creating scientific visualizations and interactive plots. It leverages the power of modern Graphics Processing Units (GPUs) through OpenGL to render large datasets efficiently. Vispy supports a wide range of visualization types, including 2D plots, 3D visualizations, volume rendering, and more, making it suitable for scientific research, data analysis, and educational purposes.

A flexible tool for creating, organizing, and sharing visualizations of live, rich data. Supports Torch and Numpy. Visdom aims to facilitate visualization of (remote) data with an emphasis on supporting scientific experimentation. Broadcast visualizations of plots, images, and text for yourself and your collaborators. Organize your visualization space programmatically or through the UI to create dashboards for live data, inspect results of experiments, or debug experimental code. Visdom has a simple set of features that can be composed for various use-cases. The UI begins as a blank slate, you can populate it with plots, images, and text. These appear in windows that you can drag, drop, resize, and destroy. The windows live in envs and the state of envs is stored across sessions. You can download the content of windows, including your plots in svg.

A tool for visualization, classification, and quantification of three-dimensional secondary ion mass spectrometry data.

This toolbox contains a set of Python procedures in order to compute examples associated with the computation of Realizable Sign Conditions (RiSC) due to the approach by Basu, Pollack and Roy. The RiSC approach is a way to solve and analyze systems of polynomial equations and inequalities over the real numbers in the field of real-algebraic geometry. The involved computations often consist of highly sophisticated notions, not easy to illustrate by hand. VisualRiSC provides implementations of such notions and functions using the Python package SymPy, on the one hand, and an interface to Gnuplot in order for a visualization of examples using the Python package Gnuplot.py.

VividSTORM is a free and open-source standalone software with graphical user interface, for the correlated visualization and analysis of superresolution single molecule localization microscopy (SMLM) molecule lists and conventional pixel intensity-based images. The localization points (LPs) within this ROI can be analyzed using the selected built-in functions. NOTE: If you encounter issues not addressed by the user guide, please contact by message on this site or via e-mail for additional support: vividstorm[at]koki.mta.hu If you find our software useful in your project, please cite: Correlated confocal and super-resolution imaging by VividSTORM Nature Protocols 11, 163–183 (2016) doi:10.1038/nprot.2016.002

VizStack is a framework to run GPU-enabled applications. You may set up tiled displays, and run popular applications on them. VizStack can convert nodes into a shared remote visualization farm. Individual GPUs can be allocated to users too.

Java-based scientific graphics with support for Java, Groovy, MATLAB, Python, the R statistical environment, Scala and SciLab.

WebBabel is a python web application using OpenBabel to convert files from one format to another. It runs under Windows, Mac or Linux on your desktop, workstation or laptop. It uses the Jmol (or Marvin) viewer to show the structures being converted.

Sharing lists of molecular structures with associated chemical properties is a common task in computer-aided drug design and medicinal chemistry. WebChem Viewer is a simple, free, open-source program that generates HTML-formatted output that can be viewed in any modern web browser, on any operating system (including mobile), without requiring the installation of additional software. The output can also be easily incorporated into existing web pages. WebChem Viewer is released under the FreeBSD license. It was created by Jacob Durrant, a post-doc in the lab of Rommie E. Amaro.

WebDX is a framework for deploying OpenDX applications over the web.

A colorized interactive dotplot program designed for pair-wise comparisons of RNA & DNA. The original idea was from the mind of late Prof. William J. Dreyer of Caltech. The idea is to be able to see the "tapestry" of life, which comes alive with color.

A Java software for 3D visualization of graphs/networks. It implements many graph layout algorithms (such as force-directed methods), graph generators (such as scale-free networks) and graph modifiers. Most functions can be accessed through its GUI.

ATTENTION: Cumulative update 2.5.0 has been released!! The update works for any previous 2.x.x version. If upgrading from version v1.x.x, please download and install v2.0.0 first. IMPORTANT FIXES in respect to base v2.0.0 version: v.2.5.0 introduces the Differential Attenuation and Cube Viewer utilities, and migrates user database to *.json files v2.4.3 fixes a with K element in the fit-approx method v2.4.3 fixes and issue where saving plots with fit-approx or a auto-wizard could freeze the software v2.4.2 introduces Image Viewer to Mosaic v2.4.1 fixes an issue in merging H5 or EDF datasets with Mosaic Full changelog at https://linssab.github.io/history X-Ray Fluorescence Imaging Software for Multiple Samples is an open source software to manipulate and study macro-X-Ray Fluorescence (MA-XRF) datasets. XISMuS also works as a sample management tool, where you can easily change between datasets (samples) and compare, cross-interact and normalize them.

Inter University Multi-Modal Imaging

Zherlock has now changed name to SciCraft and no longer hosted on sourceforge. Visit our new site at http://www.scicraft.org

This software aims help students of analytic geometry courses by visualizating several key concepts.

Progress bars for threading and multiprocessing tasks on the terminal and Jupyter Notebook. atpbar can display multiple progress bars simultaneously growing to show the progresses of iterations of loops in threading or multiprocessing tasks. atpbar can display progress bars on the terminal and Jupyter Notebook. atpbar can be used with Mantichora. atpbar started its development in 2015 as part of Alphatwirl. atpbar prevented physicists from terminating their running analysis codes, which would take many hours to complete, by showing progress bars indicating their codes were actually running. The progress bars have saved the physicists countless hours in total. atpbar had been the sub-package progress of alphatwirl until it became an independent package, with the name atpbar, in February 2019.

This toolkit allows complete control of a microscopy setup from Labview, Matlab, Scilab, Python, .Net, VB, IgorPro, Mathematica and more. Included is a standalone program for image acquisition and scripting control of a scientific microscope.

bitHull is a Simple unstructured data store-and-share mechanism. It is part experimental graph-based task/note/idea management system and part data aggregator.

--UPDATE-- New Version is now integrated in the official PyMOL plugin repository! --UPDATE-- The BNI (Beyond Normal Interaction)- Tools is a plug in for the PyMOL molecular visualization system which adds additional functionalities and presets to the PyMOL GUI and also adds useful extended commands.