Activity for IQM
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iqmmug committed [r728]
-updated batch files
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- updated log4j-1 to log4j-2 2.12.1
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- updated commons-codec to 1.13
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- updated maven surefire plugin to 3.0.0-M3
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- updated JUnit from 4 to 5
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- updated JfreeChart to version 1.5.0
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-retry commit of updated file headers and properties
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- updated current year in all file headers.
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- changed some target values for junit tests.
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- changed default gray value range to 8bit for GLCM statistics.
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- added two new options (sum of diff and SD) for generalized entropies.
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- added Difference option for computation of probabilities of generalized entropies.
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- bugfix, probabilities weren't correctly computed.
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- implemented generalized entropies for plots.
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- rearranged order of generalized entropies in GUI and so.
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- added normalized and Escort entropies.
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- added several general entropies (Curado, Exponential, SGamma, .....). Should all work now.
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- added GammFunction.java to api; added generalized entropies SEta computation, values to be checked.
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- Renyi and Tsallis values seem to be correct, added graph general entropies H1,H2,H3, added maximal parameter settings to GUI and Descriptor.
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- Renyi and Tsallis entropies for q=1 implemented, values should still be tested.
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- Generalized Renyi and Tsallis entropies are working now, but should be tested.
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- added new image processing feature generalized entropies - operator class not working yet!
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- changed plot resample factor from a few fixed values to arbitrary values.
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- added signal resampling feature.
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- changed x axis for interval extractions; added a new method for PSD parameter computations;
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- modified properties only.
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- moved osea4java classes to iqm-api and added QRSPeak extraction from a file stream (comparable to SVS extraction).
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- some GUI editing.
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- removed osea folder.
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- removed osea folder
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- added QRS detection according to OSEA.
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- added QRS peak detection according to Chen&Chen.
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- some changes to plot reading.
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- switched log4j level to debug.
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- changed ecg extension to b16.
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- added ecg plot reading. Not finished yet!
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- updated main pom to Java11.
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- (bugfix) linear regression getters adapted to new flanagan-jdk1.8.0.java version.
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- updated Flanagan library to jdk1.8.0 version.
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- some performance improvements and changed annotations of axes .
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- HRV power spectrum parameters are now working. Existing problem: Gliding option can have easily too low data points for FFT.
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- provided units for result values and added a PSD method (which is still not ready).
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- bugfix: Shuffle surrogate option did not work for gliding values in PlotOpComplLogDepth.
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- disabled some surrogate methods for HRV analysis because they would produce negative values.
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- Bugfix: changed to absolute differences instead of differences including negative values. Computations are now validated by an Excel spreadsheet.
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- Values for SDANN and SDNNI should be right now.
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- added new plot feature HRV to compute standard HRV parameters (SDANN and SDNNI values are wrong yet!!!!!!)
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- changed image file writing from JAI to ImageIO for jpg extension.
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- eliminated loci_tools.jar custom import, because it is a very large package and a direct Maven dependency of ome's formats-bsd is enough for J2K reading.
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- changed some entries so that mvn verify runs without errors.
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- updated test values.
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- changed image header reading to classes from com.drewnoakes package, because org.w3c.dom is a split package (java.xml and loci_tools.jar use them).
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- changed image import for SVSImageExtractor, because the JAI Tiff Decoder cannot handle jpg compressed images since Java-9.
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- added new loci_tools.jar version 5.9.1 to the lib directory and updated pom.
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- eliminated jgoodies library; changed Formlayout() to standard FlowLayout().
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- updated dependency versions in poms and added module-info.java files.
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- automatic header added because of Maven eclipse build.
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- edited ToolTipText of thumbnails check boxes in the Manager.
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- changed color from blue to green of line ROI boundary rectangles for moving the line's end points.
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- bugfix false format of angle character in OperatorGUI_Align.
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- IqmOpStatistics: added some binary Histogram statistics.
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- wav format option only for plot saving, wav would not make sense for tables.
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- simplified plot file extension checks and settings for plot and saving.
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- added wav file saving of plots.
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- bugfix wrong buffersize for wav import.
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- added wav import.
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- added java9 and java10 profiles i nmain pom.xml
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Java 9 URLClassLoader cast not allowed --> plugins are not loaded during runtime
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Java 9 jpg images cannot be opened
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Java 9 URLClassLoader cast not allowed --> plugins are not loaded during runtime
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Java 9 URLClassLoader cast not allowed --> plugins are not loaded during runtime
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Java 9 URLClassLoader cast not allowed --> plugins are not loaded during runtime
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Java 9 URLClassLoader cast not allowed --> plugins are not loaded during runtime
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Java 9 missing tools.jar
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Java 9 Vector<Vector<Double>>
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Java 9 IQM not starting
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Workaround: Added following dependencies to the iqm-app pom.xml: <dependency> <groupid>javax.xml.bind</groupid> <artifactid>jaxb-api</artifactid> <version>2.3.0</version> </dependency> <dependency> <groupid>com.sun.xml.bind</groupid> <artifactid>jaxb-impl</artifactid> <version>2.3.0.1</version> </dependency> <dependency> <groupid>org.glassfish.jaxb</groupid> <artifactid>jaxb-runtime</artifactid> <version>2.3.0.1</version> </dependency> <dependency> <groupid>javax.activation</groupid> <artifactid>activation</artifactid>...
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Java 9 missing tools.jar
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Java 9 missing tools.jar
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It seems that it is not used any more
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Java 9 Vector<Vector<Double>>
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Java 1.9 Vector<Vector<Double>>
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- increased lauch4j version number in order to work with Java 1.9 and newer.
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- edited some pom and a bat file
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- added tools.jar library
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- eliminated the word tank from a overlaytooltip.
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- updated version number to 4.0 in main window and poms.
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- opening of jpg images now with ImageIO.read() because JAI throws an error since Java 1.9.
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- edited pom entries.
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- edited iqm-app pom.xml
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- changed minimal Java version to 10.0.2, resolved a code incompatibility.
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- changed automatically current year from 2017 to 2018 for every file on project build.
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- changed iqm version number to 4.0 in poms
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- initial copy of iqm.
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- Deprecated method crateThumbnails.
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- thumbnail creation only when they are actually needed (according to Kleinowitz).
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- added missing call command.
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