Igor committed [r1172] on Code

Fixed segfaults in groupRedraw and chain superatoms

Igor committed [r1171] on Code

Updated metrics spreadsheet

Igor committed [r1170] on Code

Added chain.txt to osra.nsi installer

Igor committed [r1169] on Code

Added metrics spreadsheet

Igor committed [r1168] on Code

Added Oxygen to the list of organic non-carbon atoms for mol stats

Igor committed [r1167] on Code

Relaxed limit on average bond length vs real font height

Igor committed [r1166] on Code

Do not calculate number of small angles if chains are present

Igor committed [r1165] on Code

Added superatoms from USAN

Igor committed [r1164] on Code

Added superatoms from uob

Igor committed [r1163] on Code

Finished uspto super atoms and chains

Igor committed [r1162] on Code

Working on adding chain superatoms from uspto

Igor committed [r1161] on Code

Working on adding chain superatoms from uspto

Igor committed [r1160] on Code

Added superatoms from JPO

Igor committed [r1159] on Code

Added chain.txt map

Igor committed [r1158] on Code

Started implementation of 2-connected superatoms - CH2, CH2CH2, etc.

Igor committed [r1157] on Code

Version bump to 2.2.3

Igor committed [r1156] on Code

Fix for extend terminal bond to label

Igor committed [r1155] on Code

Version bump to 2.2.2

Igor committed [r1154] on Code

Fixed a potential buffer overflow for mcdlutil

Igor committed [r1153] on Code

Improved remove zero bonds

Igor committed [r1152] on Code

Improved collapse double bonds function

Igor committed [r1151] on Code

Recognition improvements

Igor committed [r1150] on Code

Improvements for Markush structures

Igor posted a comment on ticket #23

The changes in GOCR are concerned not with threading support but with building it as a library. You are welcome to try building from an unpatched source of course.

Andrius Merkys posted a comment on ticket #23

Thanks. Is it still possible to use OSRA with unpatched GOCR? Are the changes in the patched version substantial, or just concerning threading support?

Igor posted a comment on ticket #23

The recommended way to build OSRA from source is to use patched GOCR source code from https://sourceforge.net/projects/osra/files/gocr-patched/ When compiling GOCR please make sure to run "make libs" to actually build GOCR library. By default only gocr executable is built.

Andrius Merkys created ticket #23

Build failure with GOCR: thread-local declaration of 'job_t* OCR_JOB' follows non-thread-local declaration

Igor modified a wiki page

Usage

Igor modified a wiki page

Usage

Igor modified a wiki page

Home

Igor modified a wiki page

Download

osra released /osra/2.2.1/osra-2.2.1.tar.gz

Igor modified ticket #21

Patched openbabel compilation failed on Ubuntu

Igor posted a comment on ticket #21

Glad it was easy to resolve.

avman posted a comment on ticket #21

This is solved after adding #include <ctime> in bunch of locations.</ctime>

avman created ticket #21

Patched openbabel compilation failed on Ubuntu

Igor committed [r1149] on Code

Version bump to 2.2.1

Igor committed [r1148] on Code

Rearranged Scaling processing

Igor committed [r1147] on Code

Fine-tuning scaling process

Igor committed [r1146] on Code

Modified Scaling processing.

Igor committed [r1145] on Code

Fixed thresholding for large pdfs

Igor committed [r1144] on Code

Separate pdf_resolution option

Igor committed [r1143] on Code

Fixed ocr_page for very large pages

Igor committed [r1142] on Code

Fixed segfault for large images morphological transform

Igor committed [r1141] on Code

Version bump to 2.2.0

Igor committed [r1140] on Code

Handle large pdf pages.

Igor committed [r1139] on Code

Do not try 180 degree rotation, only 90 and 270

Igor committed [r1138] on Code

Version bump to 2.1.12

Igor committed [r1137] on Code

Fix for bracket detection

Igor committed [r1136] on Code

Fixed confidence estimate for multi-fragment box.

Igor committed [r1135] on Code

Replaced string_view over rvalue to string to avoid UB.

Igor committed [r1134] on Code

Fixed isdigit check for AliasData

Igor committed [r1133] on Code

Version bump to 2.1.11

Igor committed [r1132] on Code

Improved handling of brackets.

Igor committed [r1131] on Code

Moved 2d coordinate generation before structure modifications

Igor committed [r1130] on Code

Reduced threshold for bracket detection.

Igor committed [r1129] on Code

Improved bracket recognition. Add coordinates to mis-placed superatoms.

Igor committed [r1128] on Code

Improved aromatic ring perception

Igor committed [r1127] on Code

Adjusted old-style aromatic bond selection and bracket detection.

Igor committed [r1126] on Code

Bug fix

Igor committed [r1125] on Code

Sync with customer-developed spelling/superatom maps

Igor committed [r1124] on Code

Added new spelling/superatom patterns

Igor committed [r1123] on Code

Resolution selection per box, instead of per page.

Igor committed [r1122] on Code

Updates for better handling metals

Igor committed [r1121] on Code

Added native SuspendThread on win32 build.

Igor committed [r1120] on Code

Version bump to 2.1.10

Igor committed [r1119] on Code

Added check for black lines thickness.

Igor committed [r1118] on Code

Implemented morphological transform for salt-and-pepper noise reduaction

Igor committed [r1117] on Code

Version bump to 2.1.9

Igor committed [r1116] on Code

Added text lines removal by dilation mask transform (inactive)

Igor committed [r1115] on Code

Remove large fully-connected segments

Igor committed [r1114] on Code

Fixed issues with timeout on OSX

Igor committed [r1113] on Code

Bumped version to 2.1.8

Igor committed [r1112] on Code

Fixed a bug with stderr

Igor committed [r1111] on Code

Fixes for compilation on MinGW

Igor committed [r1110] on Code

Fixes for compiling with clang on OSX

Igor committed [r1109] on Code

Put the detached threads to sleep

osra released /gocr-patched/gocr-0.50pre-patched-2.tgz

Igor committed [r1108] on Code

Introduced timeout functionality

osra released /openbabel-patched/openbabel-3-0-0-patched-3.tgz

Igor committed [r1107] on Code

Added v3000 option to enable V3000 MDL output

Igor committed [r1106] on Code

Increased lowest font height for the hi-res images

Igor committed [r1105] on Code

Removed hard-coded 500dpi resolution

Igor committed [r1104] on Code

Implemented resolution heuristics

Igor committed [r1103] on Code

Implemented eProcessing enum

Igor committed [r1102] on Code

Fixed anisotropic smoothing timer issue

Igor committed [r1101] on Code

Optimizations and bug fixes

Igor committed [r1100] on Code

Fixed a bug with MOL file output

Igor committed [r1099] on Code

Moved superatom/spelling map loading out of image processing loop

Igor committed [r1098] on Code

Added option to process multiple input files or give a folder as an input.

Igor modified ticket #9

configure: error: GOCR API check failed; make sure you have installed libgocr-dev package or check config.log

Lyubomir Kotopanov posted a comment on ticket #9

Works now, thanks

Igor posted a comment on ticket #9

Lyubomir, When you were building gocr did you run: make libs make all install The header should not be installed in src folder, and there certainly needs to be a library built.

Lyubomir Kotopanov posted a comment on ticket #9

I have already downloaded and built gocr and openbabel from osra.sf.net. I noticed that the lib folder is empty - not sure if that should be the case. I tried this: ./configure --with-gocr-include=/home/kotop/gocr-0.50pre-patched/src --with-gocr-lib=/home/kotop/gocr-0.50pre-patched/lib But not it says it can't find pgm2asc.h which I tripled checked that it's in the src folder. I also tried pointing it to only gocr folder (/home/kotop/gocr-0.50pre-patched) but still can't find pgm2asc.h

Igor posted a comment on ticket #9

Lyobomir, Please download and build patched versions of gocr and openbabel available from osra.sf.net: https://sourceforge.net/projects/osra/files/gocr-patched/ https://sourceforge.net/projects/osra/files/openbabel-patched/ If osra configure script does not detect GOCR or OpenBabel headers you can use command-line options to point to the installation folders, for example: --with-gocr-include=/usr/local/include/gocr/ --with-openbabel-include=/usr/local/include/openbabel3/ Hope this helps, Igor

Lyubomir Kotopanov created ticket #9

configure: error: GOCR API check failed; make sure you have installed libgocr-dev package or check config.log

Igor committed [r1097] on Code

Updated spelling and superatom dictionaries

Igor committed [r1096] on Code

Fixed gocr call