ONDEX Suite

Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.

Project Samples

OVTK2 displaying two protein-protein interaction networks.

FH8 protein with manual and text mining based GO annotations

Cellulose biosynthesis pathway and gene expression data

Filtering a PPI network according to confidence values

Project Activity

See All Activity >

License

GNU General Public License version 2.0 (GPLv2)

Follow ONDEX Suite

ONDEX Suite Web Site

Other Useful Business Software

Gen AI apps are built with MongoDB Atlas

Build gen AI apps with an all-in-one modern database: MongoDB Atlas

MongoDB Atlas provides built-in vector search and a flexible document model so developers can build, scale, and run gen AI apps without stitching together multiple databases. From LLM integration to semantic search, Atlas simplifies your AI architecture—and it’s free to get started.

Start Free

Rate This Project

User Reviews

Be the first to post a review of ONDEX Suite!

Additional Project Details

Languages

English

Intended Audience

Developers, Healthcare Industry, Information Technology, Science/Research

User Interface

Command-line, Java Swing, Web-based

Programming Language

Java

Database Environment

Berkeley/Sleepycat/Gdbm (DBM)

Related Categories

Java Search Engines, Java Bio-Informatics Software, Java Information Analysis Software, Java Data Analytics Tool, Java Data Integration Tool

Registered

2004-06-21

Similar Business Software

LatchBio

Stop wresting with cloud infrastructure and broken informatics tools. Start discovering biological insights today. Scientific discovery is bottlenecked by the fragmentation of tooling across biology and bioinformatics teams. We built a harmonized bioinformatics platform between wet lab and dry...

See Software
DataMelt

DataMelt (or "DMelt") is an environment for numeric computation, data analysis, data mining, computational statistics, and data visualization. DataMelt can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear...

See Software
GeoMx Digital Spatial Profiler (DSP)

Quickly resolve tissue heterogeneity and the complexity of microenvironments with the GeoMx Digital Spatial Profiler (DSP), the most flexible and robust spatial multi-omic platform for analysis of FFPE and fresh frozen tissue sections. GeoMx is the only spatial biology platform that...

See Software
Seqera

Seqera is a bioinformatics platform developed by the creators of Nextflow, designed to streamline and enhance the management of scientific data analysis workflows. It offers a comprehensive suite of tools, including the Seqera Platform for orchestrating scalable data pipelines, Seqera Pipelines...

See Software
Google Cloud BigQuery

BigQuery is a serverless, multicloud data warehouse that simplifies the process of working with all types of data so you can focus on getting valuable business insights quickly. At the core of Google’s data cloud, BigQuery allows you to simplify data integration, cost effectively and securely...

See Software
Process Street

Process Street is an AI-powered compliance operations platform that automates complex workflows, enforces standards, and tracks audit data in real time. Teams use it to create structured SOPs, assign tasks, collect data, and monitor execution with intelligent oversight. From onboarding and...

See Software