Best Payroll Software in Japan
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Compare the Top Payroll Software in Japan as of November 2025
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What is Payroll Software in Japan?
Payroll software helps businesses automate the payment of salaries and wages to their employees. It is used to calculate and process payroll payments, manage employee information, and generate reports. It is a convenient and efficient way to ensure that employees are paid on time and accurately. Payroll software typically includes features for generating paychecks, direct deposit, tax filings, generating year-end tax forms (such as W-2s), and maintaining accurate payroll records. Additionally, many payroll software solutions integrate with time-tracking systems, HR management tools, and accounting software to simplify overall business operations and ensure accuracy in payroll processing. Compare and read user reviews of the best Payroll software in Japan currently available using the table below. This list is updated regularly.
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1
BambooHR
BambooHR®
BambooHR Payroll takes the stress out of payday. By combining a single source of data with comprehensive reporting, full-service tax filing, and responsive support, BambooHR ensures employees are paid accurately and on time. With payroll handled, HR can spend less time worrying about compliance and more time focusing on people.Starting Price: $250 per month -
2
RemotePeople
RemotePeople
RemotePeople is a leading Employer of Record (EOR) platform, trusted by top global companies to manage their international workforce. We help businesses efficiently recruit, hire, pay, and manage employees and contractors across 150+ countries, ensuring compliance with local labor laws and payroll regulations. Our platform simplifies global expansion, offering secure and compliant solutions that allow you to confidently scale your team worldwide. Remote People Services: Employer of Record (EOR) Compliantly hire employees in 150+ countries, handling all legal and HR responsibilities. Global Payroll & Benefits Accurate, multi-currency payroll and locally compliant benefits. Contractor Management Onboard, manage, and pay contractors in compliance with worker classification laws. International Recruitment Access top global talent with our expertise. Background Checks Conduct thorough background screenings for secure hiring.Starting Price: $199 -
3
OrangeHRM Free HR Software
OrangeHRM
OrangeHRM provides a world-class HRIS experience and offers everything you and your team need to be that HR hero you know that you are. Whether you are trying to track PTO or hold performance reviews, you get all of the tools you need to shine. Thousands of businesses around the world are benefitting from OrangeHRM as their HR management software. It doesn’t matter whether you are in the start-up stage or a multinational organization, our free & open source HR software, the OrangeHRM Starter version will help you be the HR hero you know you are with powerful HR management capabilities which include: - Employee Management - PTO/Leave Management - Reports & Analytics - Performance Management - HR Administration - Recruitment (ATS) - Time Tracking - Mobile App You can use the OrangeHRM Starter edition on the cloud or download it and host it yourself.Starting Price: $0 -
4
FreshBooks
FreshBooks
Make invoicing and billing painless for your small business with FreshBooks. A top-rated invoice and accounting software for self-employed professionals and small businesses, FreshBooks offers a fast, easy, and secure way of crunching numbers so companies can focus on doing the work they love. It offers a wealth of powerful features that includes invoicing, expense tracking, time tracking, project management, payment processing, and reporting. FreshBooks also lets users work from anywhere with the Freshworks mobile app.Starting Price: $6.30/month -
5
Xero
Xero
Xero's payroll software, with its Gusto integration, makes payroll simple for small businesses. Automatically calculate taxes, file payroll taxes, and pay employees with ease, ensuring compliance with federal, state, and local regulations. Xero integrates directly with your account, syncing payroll data for accurate bookkeeping. With features like next-day direct deposit and automated filings, Xero streamlines payroll, saving you time and reducing administrative tasks.Starting Price: $20/month -
6
Ubeya
Ubeya
The ultimate staffing platform for temporary and shift work. Offering an end-to-end solution for staffing/recruitment agencies, stadium event management and businesses employing temp workers. Ubeya empowers businesses and agencies through optimizing processes, scheduling, communication, payroll and compliance. The platform includes two apps for employees and managers, and a client portal for orders. Ubeya deploys AI-powered demand forecasting to create schedules that become more accurate over time, helping you schedule the right employees at the right times. The worker is at the center of the platform. We understand that flexibility is the mantra in today's work environment, and build our software to encourage employees to pick up shifts at the times that fit best for them, leaving workers and employers satisfied.Starting Price: $4/month/active user -
7
OnTheClock
OnTheClock
OnTheClock is a modern Time Clock Software that helps business owners stay in compliance by tracking employee hours worked. The cloud-based time tracking system automatically calculates and logs employees' punch in and punch out times to display accurate time cards for payroll. Streamline your payroll process by integrating OnTheClock with your payroll software. Quickly export time card data to your payroll provider or easily allow accountant access to your time clock data via email invite. The user-friendly dashboard also allows business owners and admins to manage PTO. Receive, approve, or deny paid time off requests sent by an employee through the time clock system. Additionally, experience a variety of robust employee time clock features such as GPS, scheduling, job and product costing, and much more.Starting Price: $5 base fee + $4 per employee -
8
QuickBooks Online
Intuit
QuickBooks Online is the most popular accounting software in the world. QuickBooks Online makes accounting easy. Make tracking receipts, income, bank transactions, and more feel simple with the #1 small business accounting software. Snap photos of your receipts and link them to expenses right from your phone. Our agents are ready and available to answer all your QuickBooks questions. Use the apps you know and love to keep your business running smoothly. QuickBooks Online works on your PC, Mac, tablets, and phones. Click the link above to get a 30 day free trial and 50% off your first 3 months. More than accounting software. QuickBooks helps you track income, expenses, and stay ready for taxes. Customers find on average $3,534 in tax savings per year. Need more help? QuickBooks Live helps you stay organized and be ready for tax time. QuickBooks comes with a mobile app that help you run your business on the go—anytime, anywhere.Starting Price: $9/month (normally $15/month) -
9
Sage HR
Sage
Sage HR is a cloud HR and people management solution that streamlines and automates your HR processes across the end-to-end employment journey while creating really engaging and rewarding experiences for your employees. With a few clicks simply upload your employee database to your new online staff directory. Never worry about keeping track of random time-off and shift change requests. Use filters to create custom reports and data-rich company graphs. Sage HR is a complete HR solution. Enabling organisations to have a comprehensive view of their on site and remote workforce, whilst easily managing employee records, holiday and sickness absence. The features don’t stop there, with an easy to access mobile app and highly valuable functionality including reports and data small to medium size businesses can rest assured that the people management piece is taken care of when using Sage HR.Starting Price: $5.50 per month -
10
Deel
Deel
Deel is the global HR platform for onboarding, hiring, and paying your international workforce. Manage global hires, contracts, payroll, compliance, and team engagement from one central dashboard. • Hire contractors and employees in over 150 countries • Generate and sign e-contracts tailored to local labor laws and reviewed by Deel's network of legal partners • Automatically collect documents, permits, and ID verification • Offer full payment flexibility for your team across 120+ currencies and 10+ payment methods • Track and approve time off and expense requests • Simplify accounting with automatic invoicing and API integrations with top accounting software • Access 24/7 support for your team in 10 different languagesStarting Price: $49 per contractor/month -
11
UKG Pro
UKG
UKG Pro is our award-winning human capital management (HCM) solution that helps simplify complex HR processes and provide powerful insights about your workforce. Marrying deep functionality and artificial intelligence (AI) technology with an intuitive, best-in-class user interface, UKG Pro makes it easier for HR and business leaders to optimize performance and improve work experiences for their people. From big-picture data to zooming in to the individual employee’s journey in a matter of seconds—UKG Pro can support even the most complex organizational needs in HR, payroll, time, and talent. Gain one, comprehensive view of all your employee data, including insight into your global teams. Discover the most powerful payroll engine in the industry today, and simplify the most complex tax processes. Deliver a personalized, candidate-centric experience to potential employees, and make it easier for recruiters to assess the right fit. -
12
greytHR
Greytip Software Private Limited
The greytHR Platform is a suite of cloud HR solutions for small and medium enterprises (SMEs). It offers productivity tools for better people management, simpler HR processes, and professional delivery of HR services. The Employee Portal for the manager and employee self-service leads to better employee engagement and all-around time savings. The greytHR software is used by 20,000+ customers and 2 million users in India and the Middle East. Salient Features: ● Core HR ● Onboarding software ● Employee lifecycle management ● Leave & Attendance management ● Payroll management (for India and Middle East) ● 100% HR Compliances (for India & Middle East) ● Document management ● HR Reports and Analytics ● Employee Portal and mobile app ● Integrations & REST API. greytHR is much more than just great software. We take pride in our passionate service, a vibrant HR community, and helpful learning resources.Starting Price: $30 for GCC, ₹3495 for India -
13
Paylocity
Paylocity
Stay ahead of industry trends and client needs with a homegrown, single-database software platform. Rely on seamless implementation that leads to a dedicated Account Manager and service team unlike other providers. Use the same solutions Paylocity uses every day to drive engagement, collaboration, and success. Give administrators, supervisors, and employees the functionality to increase efficiency of daily activities. Connect Paylocity with other business systems to effortlessly flow data across the tools you use most. Headquartered just outside Chicago, Paylocity has revolutionized the marketplace for payroll and human resources professionals for more than 20 years. As HR and payroll professionals, you are the touchpoint between businesses and their employees during this public health emergency. Consider us your resource as you navigate the impact and a new way of operating. The coronavirus pandemic is shifting the daily reality for us all. But we're in this together. -
14
SattvaHR
Hashkrio Tech LLP
SattvaHR is an all-in-one Human Resource and Time Attendance Management software, trusted by 200+ companies for seamless workforce operations. With a powerful mobile app and web access, it automates payroll, chat, notifications, and attendance tracking. Employees can clock in and out effortlessly via geo-location, fingerprint, or PIN. Simplify HR, enhance efficiency, and empower your team with SattvaHR—the smarter way to manage your workforce. Bio-metric Device attendance, Mobile app Attendance Multiple Language, Multiple Companies, Branches Management, Employee Appraisals, Employee Training, Award, Event Employee Transfer, Employee Resignation, Trip Management, Employee Promotion, Employee Termination, Company Holidays, Job & Recruitment Portal Employee Job Portal, Employee Interview Schedule, Employee's To Do List, New Announcement from Company, Festival or Events, Employee Meeting, Company Assets management, Document Expiry Management,Starting Price: $2 / Month / Employee -
15
SMART ADMIN
Smart Admin
SMART ADMIN is an Integrated Project Management tool combined with Timesheet, Daily Schedule, Leave and Payroll Management Its unique features like tracking project progress against hours with option to subscribe add-on features on need basis making it highly flexible for subscribers. Further the low cost entry makes it affordable for all. While configuring payroll, the subscriber can name salary component according to organizational convention. It can generate payroll by integrating leave and working hours. The option to link timesheet with payroll ensures that e no loss of pay of reported days. discounts, shipping charges, etc. After registration, start with Trial Version, and then move to Regular Package. No Credit Card details needed for Trial Version. SmartAdmin encourages greater Collaboration @Work Place, and seek consistency in project execution with reduced operational risks. The timesheet option brings lot of comfort in managing a day.Starting Price: $4.80 per year per user -
16
QuickBooks Payroll
Intuit
Easily pay your team and access powerful tools, employee benefits, and supportive experts with the #1 online payroll service provider. Manage payroll and access HR and employee services in one place. Pay your team automatically once your payroll setup is complete. We'll calculate, file, and pay your payroll taxes automatically. Keep cash longer with free same-day direct deposit. Manage benefits and employee services from your payroll account. Keep cash longer with direct deposit. You’ll also have the flexibility to pay your team when you want with same-day direct deposit. Your time tracking data automatically flows into your account. You can approve timesheets, pay your team, and create invoices right from your phone. Free up valuable time and set your payroll to run automatically. If you turn on Auto Payroll, we’ll also send notifications to help you manage your account.Starting Price: $35 per user per month -
17
TimeTrex
TimeTrex
Rules can be automatically applied to specific employees or situations to automate all calculations, including overtime, premiums and multiple pay rates! Managers can remotely monitor and get up to the second reports regarding employee time and attendance, from anywhere at anytime. Eliminate waiting until the end of the pay period to review attendance records. Setup an unlimited number of accruals to automatically track employee vacations, sick days or banked time. Employees can also see their own accrual balances, eliminating time-consuming requests to human resources to lookup that information. Management has fine-grained control and tracking over where employees are able to punch in/out from, including down to the device and GEO fence level. Allocate time to jobs / tasks and track employee expenses while in the field. Handle employee skills / qualifications and process payroll with just a few clicks.Starting Price: $2.90 per month -
18
Deskera
Deskera
Business owners manage more than $1 Billion Dollar worth of business on Deskera. Get the complete business software solution for small business owners. From Invoicing and Accounting to Inventory to CRM, to HR & Payroll. Deskera all-in-one business software for small business owners & startups. Move your business to the cloud in a matter of minutes. Access invoicing, accounting, inventory, CRM, payroll, and more — in one tool. Combine your most expensive business tools into one affordable software. Maybe it’s time to level up. With Deskera, you can spend more time doing the work you love, and less time performing tedious admin. Online invoicing, accounting & inventory software for your business. Create invoices, track expenses, get a real-time view of your inventory and view financial reports when and where you need them. Deskera Books makes managing your accounting a breeze. Deskera takes care of all accounting needed for compliance and reporting. -
19
ATSTimeWork OnDemand
Apex Time Solutions
ATSTimeWorkOnDemand provides an open and integrated human capital management solution that automates your people and payment processes to save time and reduce manual, paper-based administration. ATS employee self-service access to payroll, HR and benefits data, empower your people to take control of their own information. Get help managing compliance, and delivering payroll data-related information in an accurate and timely manner. With ATSTimeWorkOnDemand companies can manage schedules, track time and attendance, administer absence and leave, and measure productivity — all streamlined through automation to engage your workforce and achieve better business results. 24/7, 365 days a year- anytime, anywhere from any device to real-time information and personalized data empowers managers and employees to make more informed decisions in the moment for better outcomes. ATSTimeWorkOnDemand powerful reporting, machine learning and analytics provides executives, and departmental managers.Starting Price: $2.00-$5.00 per month -
20
Quikchex
Quikchex
Quikchex is a leading HRMS, Payroll, and Compliance solution designed to simplify HR operations for businesses of all sizes. Our all-in-one platform helps manage employee records, attendance, leaves, and performance while automating payroll processing and ensuring 100% compliance with EPF, ESIC, TDS, and labour laws. Trusted by 1,000+ businesses, Quikchex offers a secure and seamless way to handle HR and payroll with ease. ✔ Comprehensive HRMS – Manage employee records, leaves, attendance, and performance with ease. ✔ Automated Payroll & Compliance – Process salaries accurately while staying 100% compliant with EPF, ESIC, TDS, and other regulations. ✔ Payroll Outsourcing & Compliance Audit – Dedicated experts to handle payroll processing, filings, and last-mile compliance. ✔Trusted by 1,000+ Businesses – Including prominent VC backed startups to Global Enterprises ✔Secure & Reliable – ISO 27001 and SOC 2-compliant infrastructure for data security.Starting Price: Rs 6,000/month -
21
Sapience HCM
Sapience Technology LLC
Sapience HCM is a comprehensive human resource and payroll management solution (HRMS). Its Modular structure allows maximum flexibility and customization and you can implement only the functionality required by your organization from Hire to Retire. Sapience HRMS streamlines human resource management by capturing data at the point of entry, applying your business rules and automating transaction processing. Accurate and timely data is the foundation to powerful reporting and analysis in Sapience HRMS. Sapience HCM empowers your employees and creates efficiencies in your processes. From hire to retire, it supports productivity, enables intelligent reporting and, most importantly, makes your people feel appreciated for the work they do.Starting Price: $5/Employee/Month -
22
Fluida
Fluida Europe Srl
Fluida is the cloud mobile HR platform that saves businesses time and money by turning clunky processes into tasks that can be completed in just a few taps. ATTENDANCE & SHIFTS >create and assign shift templates with a tap >check shifts on the company calendar >assign custom shifts >easy shift change requests >assign flexible shifts >create custom rules: -rounding adjustments -deferred shifts -break management -overtime CLOCKING IN&OUT >on site or remotely >GPS >Bluetooth >NFC badges LEAVE & TIME OFF >rich request forms >easy approval/denial of requests >approved requests are added to the company calendar >employe summary of all requests sent >manager summary of all requests received EXPENSE REPORTS >rich request forms >fast sending and approval >all information is saved >expense categories for automatic calculations >receipt pictures MORE FEATURES: ACTIVITY SUMMARY DOCUMENT SENDING & ARCHIVING CORPORATE COMMUNICATIONSStarting Price: €1 per user per month -
23
Factorial
Factorial
Factorial is a cloud-based business management software built specifically to empower small and medium-sized businesses. It’s not just an HR tool—it’s a comprehensive employee management software that combines automation, data, and a people-first approach to help companies scale with confidence. Track employee working hours, manage shifts, approve time off, and visualize workloads. Our cloud business management software integrates time tracking directly with payroll and project management to eliminate manual entry and errors. From sick leave to unlimited PTO policies, Factorial simplifies leave tracking through automated approval workflows, custom policy creation, and team-wide calendar visibility. It’s no surprise we were ranked the #1 PTO Tracker of 2025. From applicant tracking to onboarding, from performance reviews to training plans—Factorial supports the full employee lifecycle. Build strong, engaged teams and scale faster without needing multiple disconnected tools.Starting Price: $8/month/user -
24
CARDZ3N
CARDZ3N
CARDZ3N supports global payments for credit cards, ACH, SEPA, and Crypto (140+ coins). CARDZ3N processes payments for emerging markets & high-risk businesses, including CBD, crypto exchanges, gambling, travel, and more. We also offer a Stripe Alternative with rates starting at 2.25% for non-profits & 2.75% & $0.25 for e-commerce. CARDZ3N also offers other payment options, such as ACH, payroll and HR, benefits, or business capital. CARDZ3N Our mission is to solve the most pressing problems facing our clients, large and small. Our unique approach is what distinguishes us and what makes us different. We offer a wide range of services and solutions that help organizations achieve their vision, facilitate change, and maximize performance and productivity. -
25
Zimyo
Zimyo
Zimyo is a leading HR Tech platform that offers best-of-the-breed employee experience to organizations of all sizes. With its Cloud-based HR, Payroll, Performance, OKR, KPI/KRA, Applicant Tracking (ATS), Time & Attendance, and Employee Engagement, Employee Benefits, and 40+ modules, Zimyo assists organizations to manage employee lifecycle from hire to retire. A one-stop solution for all HR requirements that aids organizations in augmenting their productivity and workplace engagement. Zimyo is on a mission to empower thousands of organizations globally to offer true employee experience to their employees. Supported by an end-to-end implementation to improve your key metrics, Zimyo optimizes everything from – recruitment to offboarding and everything in between. Experience evolution of your entire workforce, drive higher engagement, and to build a differentiating human capital advantage.Starting Price: $2/month/user -
26
Xemplo
Xemplo
Explore tech that expedites processes for a seamless management experience. Meet Xemplo, the all-in-one workforce management solution designed to streamline HR processes for businesses worldwide. Xemplo manages the end-to-end employee/contractor lifecycle, maintaining compliance with in-country legislation while providing a consistent global user experience. At Xemplo, our mission is to simplify workforce management for businesses of all sizes. We believe managing employees and contractors should be easy, efficient, and compliant, no matter where a business is based. That’s why we offer innovative solutions that automate tasks, deliver valuable insights, and provide a single source of truth for HR professionals and managers. Xemplo platform simplifies onboarding, time tracking, payroll, and compliance, allowing you to focus on talent acquisition and client satisfaction. Xemplo takes the stress out of compliance.Starting Price: $7 per month -
27
MYOB
MYOB
MYOB Business is a comprehensive cloud-based accounting and business management software designed to streamline financial and operational processes for small to medium-sized enterprises (SMEs). It offers a wide range of features, including invoicing, expense tracking, payroll management, inventory control, and tax compliance. With real-time financial reporting and user-friendly dashboards, MYOB Business provides valuable insights to help business owners make informed decisions. The platform supports seamless integrations with banking systems, payment gateways, and other business tools, enabling automation and reducing manual tasks. MYOB Business is known for its scalability, catering to growing businesses by offering flexible pricing plans and customizable features to meet diverse industry needs.Starting Price: $11/month -
28
Sesame HR
Sesame HR
Sesame HR is a cloud-based human resources management platform designed to streamline and automate HR processes for businesses. It offers features like employee time tracking, absence management, payroll integration, and document management. The platform is user-friendly and helps companies simplify tasks such as managing employee records, monitoring performance, and ensuring compliance with labor regulations. Sesame HR also includes tools for employee self-service, allowing staff to request leave, track hours, and access documents, improving overall efficiency in HR operations.Starting Price: $4.25/user/month -
29
Digital HRMS
The Digital Group
Digital HRMS is an end-to-end employee management solution, developed by The Digital Group, that can be customized to meet the needs of every business. It’s an ideal HR partner that empowers your workforce, simplifies your operations and drives your business goals. Digital HRMS is a HR Software built by considering the New generation HR Practices, combining the power of Cloud, Mobile and Analytics. Automatic update of work hours for out-of-office work through location geo-fencing. Use of fingerprint sensor to facilitate quick and secure unlocking of application. Discover an automated approach to recording employee working hours. Quick and authentic attendance tracking of employees through face recognition. -
30
Bitwage
Bitwage
We create solutions for remote workers looking for work and to optimally receive their wages. We offer unique jobs, flexible distributions, reduced payroll costs and increased fulfillment speeds. Receive a portion of your wage in digital assets. Faster, cheaper international invoices with direct bank and wallet deposits. International people who want to get paid in digital assets for their invoices. Companies who want to offer unique digital asset benefits for their employees. International companies who want to pay employees and freelancers faster and cheaper. Companies looking for innovative HR services. Bitwage constantly analyzes all the mechanisms to distribute wages across borders, comparing traditional systems such as bank wires with new international gateways, such as XBT and XRapid protocols. Through this fully encompassing approach, Bitwage radically reduces the cost of paying workers, freelancers and outsourcing firms across borders.Starting Price: $7.99 per month
