Compare the Top Payroll Software in Japan as of November 2025

What is Payroll Software in Japan?

Payroll software helps businesses automate the payment of salaries and wages to their employees. It is used to calculate and process payroll payments, manage employee information, and generate reports. It is a convenient and efficient way to ensure that employees are paid on time and accurately. Payroll software typically includes features for generating paychecks, direct deposit, tax filings, generating year-end tax forms (such as W-2s), and maintaining accurate payroll records. Additionally, many payroll software solutions integrate with time-tracking systems, HR management tools, and accounting software to simplify overall business operations and ensure accuracy in payroll processing. Compare and read user reviews of the best Payroll software in Japan currently available using the table below. This list is updated regularly.

  • 1
    OrangeHRM Free HR Software
    OrangeHRM provides a world-class HRIS experience and offers everything you and your team need to be that HR hero you know that you are. Whether you are trying to track PTO or hold performance reviews, you get all of the tools you need to shine. Thousands of businesses around the world are benefitting from OrangeHRM as their HR management software. It doesn’t matter whether you are in the start-up stage or a multinational organization, our free & open source HR software, the OrangeHRM Starter version will help you be the HR hero you know you are with powerful HR management capabilities which include: - Employee Management - PTO/Leave Management - Reports & Analytics - Performance Management - HR Administration - Recruitment (ATS) - Time Tracking - Mobile App You can use the OrangeHRM Starter edition on the cloud or download it and host it yourself.
    Leader badge
    Starting Price: $0
    Partner badge
    View Software
    Visit Website
  • 2
    NolaPro

    NolaPro

    Noguska

    NolaPro is a robust, Linux-based ERP for Accounting, Order Tracking, Inventory Management & Payroll, designed to rival much more expensive choices. It is fully customizable and scalable for any size business, unlike any accounting program available today. The Cloud version allows a "hands-off" approach, but can be downloaded on Linux or Windows platforms for those who prefer to have local control and security. Features include: Credit Card Processing, Fulfillment & Service Order, AP, AR, Inventory, CRM, General Ledger, Payroll, Timeclock, Client Payment Portal and integration with many 3rd party apps -- or request your own! NolaPro is multi-lingual, supports multi-currency, offers tons of options & add-ons, and comes fully loaded with over 150 standard reports. A+ reviews from TechRepublic, The Linux Journal, Entrepreneur Magazine and CNet agree that NolaPro provides flexibility, features and pricing which provide you unparalleled value in managing your business.
    Starting Price: $0
  • 3
    QuickBooks Online
    QuickBooks Online is the most popular accounting software in the world. QuickBooks Online makes accounting easy. Make tracking receipts, income, bank transactions, and more feel simple with the #1 small business accounting software. Snap photos of your receipts and link them to expenses right from your phone. Our agents are ready and available to answer all your QuickBooks questions. Use the apps you know and love to keep your business running smoothly. QuickBooks Online works on your PC, Mac, tablets, and phones. Click the link above to get a 30 day free trial and 50% off your first 3 months. More than accounting software. QuickBooks helps you track income, expenses, and stay ready for taxes. Customers find on average $3,534 in tax savings per year. Need more help? QuickBooks Live helps you stay organized and be ready for tax time. QuickBooks comes with a mobile app that help you run your business on the go—anytime, anywhere.
    Leader badge
    Starting Price: $9/month (normally $15/month)
  • 4
    SattvaHR

    SattvaHR

    Hashkrio Tech LLP

    SattvaHR is an all-in-one Human Resource and Time Attendance Management software, trusted by 200+ companies for seamless workforce operations. With a powerful mobile app and web access, it automates payroll, chat, notifications, and attendance tracking. Employees can clock in and out effortlessly via geo-location, fingerprint, or PIN. Simplify HR, enhance efficiency, and empower your team with SattvaHR—the smarter way to manage your workforce. Bio-metric Device attendance, Mobile app Attendance Multiple Language, Multiple Companies, Branches Management, Employee Appraisals, Employee Training, Award, Event Employee Transfer, Employee Resignation, Trip Management, Employee Promotion, Employee Termination, Company Holidays, Job & Recruitment Portal Employee Job Portal, Employee Interview Schedule, Employee's To Do List, New Announcement from Company, Festival or Events, Employee Meeting, Company Assets management, Document Expiry Management,
    Starting Price: $2 / Month / Employee
  • 5
    SMART ADMIN

    SMART ADMIN

    Smart Admin

    SMART ADMIN is an Integrated Project Management tool combined with Timesheet, Daily Schedule, Leave and Payroll Management Its unique features like tracking project progress against hours with option to subscribe add-on features on need basis making it highly flexible for subscribers. Further the low cost entry makes it affordable for all. While configuring payroll, the subscriber can name salary component according to organizational convention. It can generate payroll by integrating leave and working hours. The option to link timesheet with payroll ensures that e no loss of pay of reported days. discounts, shipping charges, etc. After registration, start with Trial Version, and then move to Regular Package. No Credit Card details needed for Trial Version. SmartAdmin encourages greater Collaboration @Work Place, and seek consistency in project execution with reduced operational risks. The timesheet option brings lot of comfort in managing a day.
    Starting Price: $4.80 per year per user
  • 6
    TimeTrex

    TimeTrex

    TimeTrex

    Rules can be automatically applied to specific employees or situations to automate all calculations, including overtime, premiums and multiple pay rates! Managers can remotely monitor and get up to the second reports regarding employee time and attendance, from anywhere at anytime. Eliminate waiting until the end of the pay period to review attendance records. Setup an unlimited number of accruals to automatically track employee vacations, sick days or banked time. Employees can also see their own accrual balances, eliminating time-consuming requests to human resources to lookup that information. Management has fine-grained control and tracking over where employees are able to punch in/out from, including down to the device and GEO fence level. Allocate time to jobs / tasks and track employee expenses while in the field. Handle employee skills / qualifications and process payroll with just a few clicks.
    Starting Price: $2.90 per month
  • 7
    ATSTimeWork OnDemand

    ATSTimeWork OnDemand

    Apex Time Solutions

    ATSTimeWorkOnDemand provides an open and integrated human capital management solution that automates your people and payment processes to save time and reduce manual, paper-based administration. ATS employee self-service access to payroll, HR and benefits data, empower your people to take control of their own information. Get help managing compliance, and delivering payroll data-related information in an accurate and timely manner. With ATSTimeWorkOnDemand companies can manage schedules, track time and attendance, administer absence and leave, and measure productivity — all streamlined through automation to engage your workforce and achieve better business results. 24/7, 365 days a year- anytime, anywhere from any device to real-time information and personalized data empowers managers and employees to make more informed decisions in the moment for better outcomes. ATSTimeWorkOnDemand powerful reporting, machine learning and analytics provides executives, and departmental managers.
    Starting Price: $2.00-$5.00 per month
  • 8
    Sapience HCM

    Sapience HCM

    Sapience Technology LLC

    Sapience HCM is a comprehensive human resource and payroll management solution (HRMS). Its Modular structure allows maximum flexibility and customization and you can implement only the functionality required by your organization from Hire to Retire. Sapience HRMS streamlines human resource management by capturing data at the point of entry, applying your business rules and automating transaction processing. Accurate and timely data is the foundation to powerful reporting and analysis in Sapience HRMS. Sapience HCM empowers your employees and creates efficiencies in your processes. From hire to retire, it supports productivity, enables intelligent reporting and, most importantly, makes your people feel appreciated for the work they do.
    Starting Price: $5/Employee/Month
  • 9
    Factorial

    Factorial

    Factorial

    Factorial is a cloud-based business management software built specifically to empower small and medium-sized businesses. It’s not just an HR tool—it’s a comprehensive employee management software that combines automation, data, and a people-first approach to help companies scale with confidence. Track employee working hours, manage shifts, approve time off, and visualize workloads. Our cloud business management software integrates time tracking directly with payroll and project management to eliminate manual entry and errors. From sick leave to unlimited PTO policies, Factorial simplifies leave tracking through automated approval workflows, custom policy creation, and team-wide calendar visibility. It’s no surprise we were ranked the #1 PTO Tracker of 2025. From applicant tracking to onboarding, from performance reviews to training plans—Factorial supports the full employee lifecycle. Build strong, engaged teams and scale faster without needing multiple disconnected tools.
    Starting Price: $8/month/user
  • 10
    Multiplier

    Multiplier

    Multiplier

    Multiplier makes it possible to employ talented people worldwide and build internationally distributed teams. We empower companies of all sizes by working toward creating a borderless, high-performance team that wins. With Multiplier, companies can invite their employees to sign up with us, and we take care of the rest. There's no need to set up any entities or look into labour law compliance as our on-ground legal teams ensure full local compliance. Companies can employ any number of employees in 160+ countries. Employ global talent in just minutes, not days. Pay employees with 100% accuracy and run multi-country payroll easily. Generate compliant contracts quickly. Offer best-in-class benefits and insurance to employees. Manage employee taxes, allowances, bonuses, social contributions, and statutory deductions for employees anywhere in the world. Add freelancers, allow them to raise invoices and expenses, and clear them in their preferred currencies.
    Starting Price: $300 per user per month
  • 11
    CARDZ3N

    CARDZ3N

    CARDZ3N

    CARDZ3N supports global payments for credit cards, ACH, SEPA, and Crypto (140+ coins). CARDZ3N processes payments for emerging markets & high-risk businesses, including CBD, crypto exchanges, gambling, travel, and more. We also offer a Stripe Alternative with rates starting at 2.25% for non-profits & 2.75% & $0.25 for e-commerce. CARDZ3N also offers other payment options, such as ACH, payroll and HR, benefits, or business capital. CARDZ3N Our mission is to solve the most pressing problems facing our clients, large and small. Our unique approach is what distinguishes us and what makes us different. We offer a wide range of services and solutions that help organizations achieve their vision, facilitate change, and maximize performance and productivity.
  • Previous
  • You're on page 1
  • Next