Best Payroll Software for Windows

NolaPro is a robust, Linux-based ERP for Accounting, Order Tracking, Inventory Management & Payroll, designed to rival much more expensive choices. It is fully customizable and scalable for any size business, unlike any accounting program available today. The Cloud version allows a "hands-off" approach, but can be downloaded on Linux or Windows platforms for those who prefer to have local control and security. Features include: Credit Card Processing, Fulfillment & Service Order, AP, AR, Inventory, CRM, General Ledger, Payroll, Timeclock, Client Payment Portal and integration with many 3rd party apps -- or request your own! NolaPro is multi-lingual, supports multi-currency, offers tons of options & add-ons, and comes fully loaded with over 150 standard reports. A+ reviews from TechRepublic, The Linux Journal, Entrepreneur Magazine and CNet agree that NolaPro provides flexibility, features and pricing which provide you unparalleled value in managing your business.

The Perfect Payroll Management System simplifies payroll operations by automating salary calculations, tax deductions, and bonuses to ensure quick, accurate, and secure payroll processing. This enhances employee satisfaction by making payroll operations reliable and straightforward. Key features include simplified employee onboarding, which allows for efficient digital capture of employee details and document management, thus reducing paperwork and errors. The system also provides robust tools for customizing salary components to align with organizational policies, ensuring fair and accurate compensation. Additionally, it facilitates single-click payroll runs to automate various payroll activities, enhancing the accuracy of computations and compliance with tax laws. This system streamlines payroll management, making it easier for businesses to manage employee compensation effectively and efficiently.

QuickBooks Online is the most popular accounting software in the world. QuickBooks Online makes accounting easy. Make tracking receipts, income, bank transactions, and more feel simple with the #1 small business accounting software. Snap photos of your receipts and link them to expenses right from your phone. Our agents are ready and available to answer all your QuickBooks questions. Use the apps you know and love to keep your business running smoothly. QuickBooks Online works on your PC, Mac, tablets, and phones. Click the link above to get a 30 day free trial and 50% off your first 3 months. More than accounting software. QuickBooks helps you track income, expenses, and stay ready for taxes. Customers find on average $3,534 in tax savings per year. Need more help? QuickBooks Live helps you stay organized and be ready for tax time. QuickBooks comes with a mobile app that help you run your business on the go—anytime, anywhere.

ATSTimeWorkOnDemand provides an open and integrated human capital management solution that automates your people and payment processes to save time and reduce manual, paper-based administration. ATS employee self-service access to payroll, HR and benefits data, empower your people to take control of their own information. Get help managing compliance, and delivering payroll data-related information in an accurate and timely manner. With ATSTimeWorkOnDemand companies can manage schedules, track time and attendance, administer absence and leave, and measure productivity — all streamlined through automation to engage your workforce and achieve better business results. 24/7, 365 days a year- anytime, anywhere from any device to real-time information and personalized data empowers managers and employees to make more informed decisions in the moment for better outcomes. ATSTimeWorkOnDemand powerful reporting, machine learning and analytics provides executives, and departmental managers.

Sapience HCM is a comprehensive human resource and payroll management solution (HRMS). Its Modular structure allows maximum flexibility and customization and you can implement only the functionality required by your organization from Hire to Retire. Sapience HRMS streamlines human resource management by capturing data at the point of entry, applying your business rules and automating transaction processing. Accurate and timely data is the foundation to powerful reporting and analysis in Sapience HRMS. Sapience HCM empowers your employees and creates efficiencies in your processes. From hire to retire, it supports productivity, enables intelligent reporting and, most importantly, makes your people feel appreciated for the work they do.

Factorial is a cloud-based business management software built specifically to empower small and medium-sized businesses. It’s not just an HR tool—it’s a comprehensive employee management software that combines automation, data, and a people-first approach to help companies scale with confidence. Track employee working hours, manage shifts, approve time off, and visualize workloads. Our cloud business management software integrates time tracking directly with payroll and project management to eliminate manual entry and errors. From sick leave to unlimited PTO policies, Factorial simplifies leave tracking through automated approval workflows, custom policy creation, and team-wide calendar visibility. It’s no surprise we were ranked the #1 PTO Tracker of 2025. From applicant tracking to onboarding, from performance reviews to training plans—Factorial supports the full employee lifecycle. Build strong, engaged teams and scale faster without needing multiple disconnected tools.

eNETEmployer offers total employee management through a suite of online tools for Human Resource, Payroll, and Applicant Tracking / Recruitment. Use it to empower your business and reduce the rising costs associated with employee management. Convenient, Cost Effective and Reliable - Imagine the convenience of calculating your payroll at a time that's convenient to you. If you have an internet browser, you're ready to work with the program - it's that simple. And if you’re currently outsourcing your payroll, eNETEmployer will perform all the same functions at a fraction of the cost. And with no more software backups and updates to perform, you can be assured that the program is at the ready when you are.

Multiplier makes it possible to employ talented people worldwide and build internationally distributed teams. We empower companies of all sizes by working toward creating a borderless, high-performance team that wins. With Multiplier, companies can invite their employees to sign up with us, and we take care of the rest. There's no need to set up any entities or look into labour law compliance as our on-ground legal teams ensure full local compliance. Companies can employ any number of employees in 160+ countries. Employ global talent in just minutes, not days. Pay employees with 100% accuracy and run multi-country payroll easily. Generate compliant contracts quickly. Offer best-in-class benefits and insurance to employees. Manage employee taxes, allowances, bonuses, social contributions, and statutory deductions for employees anywhere in the world. Add freelancers, allow them to raise invoices and expenses, and clear them in their preferred currencies.

CARDZ3N supports global payments for credit cards, ACH, SEPA, and Crypto (140+ coins). CARDZ3N processes payments for emerging markets & high-risk businesses, including CBD, crypto exchanges, gambling, travel, and more. We also offer a Stripe Alternative with rates starting at 2.25% for non-profits & 2.75% & $0.25 for e-commerce. CARDZ3N also offers other payment options, such as ACH, payroll and HR, benefits, or business capital. CARDZ3N Our mission is to solve the most pressing problems facing our clients, large and small. Our unique approach is what distinguishes us and what makes us different. We offer a wide range of services and solutions that help organizations achieve their vision, facilitate change, and maximize performance and productivity.

Twenty20 is the first full-featured ERP solution for contractors of all sizes that is 100% customizable to your specific needs. Twenty20 is Easy to learn, Easy to setup, and Easy to use. Modules include: -Accounting - Project Management - Document Management - Estimating - Scheduling - Service Management and Work Order Management - Equipment & Fleet Management Management - Human Resource Management - Leave Management - Time and Attendance Tracking - Expense Report Management - Sales and CRM Our ideal customer: is a contractor that has multiple systems to manage their business and looking for ONE complete solution that is fully integrated and customizable to their needs and requirements.