Merge pull request #66 from BradnerLab/ppa_bionic

support bionic for ppa

published 1.3.8 to ppa so bamliquidator easily installed with ppa on Ubuntu 18.04.  also updated wiki install instructions

Author: jdimatteo

bamliquidator_internal/bamliquidatorbatch/bamliquidator_batch.py

@@ -20,7 +20,7 @@
 from os.path import basename
 from os.path import dirname
 
-__version__ = '1.3.6'
+__version__ = '1.3.8'
 
 default_black_list = ["chrUn", "_random", "Zv9_", "_hap"]
 

bamliquidator_internal/make_deb.sh

@@ -27,7 +27,7 @@ py2dsc -m "$UPLOADER <$UPLOADER_EMAIL>" bamliquidatorbatch_$VERSION.orig.tar.gz
 cp python-bamliquidatorbatch.preinst deb_dist/bamliquidatorbatch-$VERSION/debian/
 cp python-bamliquidatorbatch.control deb_dist/bamliquidatorbatch-$VERSION/debian/control
 
-for ubuntu_version in "trusty" "xenial"
+for ubuntu_version in "trusty" "xenial" "bionic"
 do
   cp -R deb_dist/bamliquidatorbatch-$VERSION deb_dist/bamliquidatorbatch-$VERSION-$ubuntu_version
   pushd deb_dist/bamliquidatorbatch-$VERSION-$ubuntu_version
@@ -40,7 +40,7 @@ mv bamliquidator-$VERSION.tar.gz bamliquidator_$VERSION.orig.tar.gz
 tar xf bamliquidator_$VERSION.orig.tar.gz
 
 cp -R debian bamliquidator-$VERSION
-for ubuntu_version in "trusty" "xenial"
+for ubuntu_version in "trusty" "xenial" "bionic"
 do
   cp -R bamliquidator-$VERSION bamliquidator-$VERSION-$ubuntu_version
   printf "$CHANGELOG" bamliquidator $ubuntu_version $ubuntu_version > bamliquidator-$VERSION-$ubuntu_version/debian/changelog

bamliquidator_internal/makefile

@@ -126,7 +126,7 @@ deb: clean archive
 
 dput: clean archive
 	debuild_args=-S ./make_deb.sh
-	for ubuntu_version in "trusty" "xenial" ; do \
+	for ubuntu_version in "trusty" "xenial" "bionic" ; do \
 		dput ppa:bradner-computation/pipeline deb_dist/bamliquidatorbatch_$(VERSION)-*$$(ubuntu_version)_source.changes ; \
 		dput ppa:bradner-computation/pipeline bamliquidator_$(VERSION)-*$$(ubuntu_version)_source.changes ; \
 	done