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1 | 1 | # Release Notes |
| 2 | +## PyMC3 3.0 (September xx, 2016) |
| 3 | + |
| 4 | +We are proud and excited to release the first stable version of PyMC3, the product of more than [5 years](https://github.com/pymc-devs/pymc3/commit/85c7e06b6771c0d99cbc09cb68885cda8f7785cb) of ongoing development and contributions from over 80 individuals. PyMC3 is a Python module for Bayesian modeling which focuses on modern Bayesian computational methods, primarily gradient-based (Hamiltonian) MCMC sampling and variational inference. Models are specified in Python, which allows for great flexibility. The main technological difference in PyMC3 relative to previous versions is the reliance on Theano for the computational backend, rather than on Fortran extensions. |
| 5 | + |
| 6 | +Since the beta release last year, the following improvements have been implemented: |
| 7 | + |
| 8 | +* Added `variational` submodule, which features the automatic differentiation variational inference (ADVI) fitting method. Much of this work was due to the efforts of Taku Yoshioka, and important guidance was provided by the Stan team (specifically Alp Kucukelbir and Daniel Lee). |
| 9 | + |
| 10 | +* Added model checking utility functions, including leave-one-out (LOO) cross-validation, BPIC, WAIC, and DIC. |
| 11 | + |
| 12 | +* Implemented posterior predictive sampling (`sample_ppc`). |
| 13 | + |
| 14 | +* Implemented auto-assignment of step methods by `sample` function. |
| 15 | + |
| 16 | +* Enhanced IPython Notebook examples, featuring more complete narratives accompanying code. |
| 17 | + |
| 18 | +* Extensive debugging of NUTS sampler. |
| 19 | + |
| 20 | +* Updated documentation to reflect changes in code since beta. |
| 21 | + |
| 22 | +* Refactored test suite for better efficiency. |
| 23 | + |
| 24 | +* Added von Mises, zero-inflated negative binomial, and Lewandowski, Kurowicka and Joe (LKJ) distributions. |
| 25 | + |
| 26 | +* Adopted `joblib` for managing parallel computation of chains. |
| 27 | + |
| 28 | +* Added contributor guidelines, contributor code of conduct and governance document. |
| 29 | + |
| 30 | +We on the PyMC3 core team would like to thank everyone for contributing and now feel that this is ready for the big time. We look forward to hearing about all the cool stuff you use PyMC3 for, and look forward to continued development on the package. |
| 31 | + |
| 32 | +## Contributors |
| 33 | + |
| 34 | + |
| 35 | + |
| 36 | +Abraham Flaxman <[email protected]> |
| 37 | + |
| 38 | + |
| 39 | + |
| 40 | +Andreas Klostermann <[email protected]> |
| 41 | +Andres Asensio Ramos |
| 42 | + |
| 43 | +Anjum48 |
| 44 | +AustinRochford <[email protected]> |
| 45 | +Benjamin Edwards <[email protected]> |
| 46 | + |
| 47 | +Brian Naughton <[email protected]> |
| 48 | +Byron Smith |
| 49 | + |
| 50 | +Chris Fonnesbeck < [email protected]> |
| 51 | +Colin |
| 52 | + |
| 53 | + |
| 54 | + |
| 55 | + |
| 56 | + |
| 57 | +Dustin Tran |
| 58 | +Eigenblutwurst < [email protected]> |
| 59 | +Gideon Wulfsohn < [email protected]> |
| 60 | + |
| 61 | + |
| 62 | +Ilan Man |
| 63 | + |
| 64 | +Jake Biesinger < [email protected]> |
| 65 | + |
| 66 | +John McDonnell < [email protected]> |
| 67 | +John Salvatier <[email protected]> |
| 68 | +Jordi Diaz |
| 69 | +Jordi Warmenhoven < [email protected]> |
| 70 | +Karlson Pfannschmidt <[email protected]> |
| 71 | + |
| 72 | + |
| 73 | +Lin Xiao |
| 74 | + |
| 75 | +Matthew Emmett <[email protected]> |
| 76 | +Maxim |
| 77 | +Michael Gallaspy < [email protected]> |
| 78 | + |
| 79 | +Osvaldo Martin <[email protected]> |
| 80 | +Patricio Benavente <[email protected]> |
| 81 | +Peadar Coyle (springcoil) <[email protected]> |
| 82 | +Raymond Roberts |
| 83 | +Rodrigo Benenson < [email protected]> |
| 84 | +Sergei Lebedev <[email protected]> |
| 85 | +Skipper Seabold < [email protected]> |
| 86 | + |
| 87 | +The Gitter Badger <[email protected]> |
| 88 | +Thomas Kluyver <[email protected]> |
| 89 | + |
| 90 | + |
| 91 | +Volodymyr |
| 92 | +Volodymyr Kazantsev |
| 93 | + |
| 94 | + |
| 95 | + |
| 96 | + |
| 97 | +brandon willard <[email protected]> |
| 98 | + |
| 99 | +ingmarschuster < [email protected]> |
| 100 | + |
| 101 | +jason <JasonTam22@gmailcom> |
| 102 | + |
| 103 | + |
| 104 | + |
| 105 | + |
| 106 | + |
| 107 | + |
| 108 | + |
| 109 | + |
| 110 | + |
| 111 | + |
| 112 | +stonebig <stonebig> |
| 113 | + |
| 114 | + |
| 115 | + |
| 116 | + |
2 | 117 |
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3 | 118 | ## PyMC3 3.0b (June 16th, 2015) |
4 | 119 |
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