biosamples api routes

Author: lukeulrich

mist-api/src/routes/biosamples/$id/get.js

@@ -0,0 +1,32 @@
+'use strict';
+
+module.exports = function(app, middlewares, routeMiddlewares) {
+  const models = app.get('models');
+  const helper = app.get('lib').RouteHelper.for(models.BioSample);
+
+  return [
+    middlewares.parseCriteria(models.BioSample, {
+      accessibleModels: [
+        models.Genome,
+      ],
+    }),
+    helper.findHandler(),
+  ];
+};
+
+module.exports.docs = function(modelExamples) {
+  return {
+    name: 'Fetch BioSample',
+    description: 'Returns a single NCBI BioSample record',
+    example: {
+      request: {
+        parameters: {
+          id: modelExamples.BioSample.id,
+        },
+      },
+      response: {
+        body: modelExamples.BioSample,
+      },
+    },
+  };
+};

mist-api/src/routes/biosamples/get.js

@@ -0,0 +1,32 @@
+'use strict';
+
+module.exports = function(app, middlewares, routeMiddlewares) {
+  const models = app.get('models');
+  const helper = app.get('lib').RouteHelper.for(models.BioSample);
+
+  return [
+    middlewares.parseCriteriaForMany(models.BioSample, {
+      accessibleModels: [
+        models.Genome,
+      ],
+      permittedWhereFields: [
+        'id',
+      ],
+    }),
+    helper.findManyHandler(),
+  ];
+};
+
+module.exports.docs = function(modelExamples) {
+  return {
+    name: 'Fetch many BioSamples',
+    description: 'Returns an array of NCBI biosample records',
+    example: {
+      response: {
+        body: [
+          modelExamples.BioSample,
+        ],
+      },
+    },
+  };
+};

mist-api/src/routes/genomes/genomes-route-helpers.js

@@ -24,6 +24,7 @@ exports.genomeFinderMiddlewares = function(app, middlewares, inputGetter) {
       accessibleModels: [
         models.WorkerModule,
         models.Component,
+        models.BioSample,
       ],
       permittedWhereFields: [
         'id',