prac4 add

Author: danielzhangau

SCIE2100_Practical4/MalS.fa

@@ -0,0 +1,33 @@
+CLUSTAL multiple sequence alignment
+
+CP11_DOG            AGFDTVTTAISWSLLYLVTNPNVQKKIQKELDAFILETFRHASFILFGLGK
+CP11_MOUSE            AGFDTVTTAISWSLMYLVTNPRVQRKIQEELDAFILETFRHSSFTLFGLGK
+CP11_HUMAN            AGFDTVTTAISWSLMYLVMNPRVQRKIQEELDAFILETFRHSSFIIFGMGK
+CP11_MONKEY            AGFDTVTTAISWSLMYLVTNPRVQRKIQEELDAFILETFRHSSFILFGLGK
+CP11_HAMSTER            AGFDTVTTAISWSLMYLVTNPGVQRKIQEELDAFILETFRHSSFTLFGLGK
+CP11_RABIT            AGFDTVTTAISWSLMYLVTKPRIQRKIQEELDAVIMETFRHTSFLLFGLGK
+CP11_RAT              AGFDTITTAISWSLMYLVTNPRIQRKIQEELDAFILETFRHSSFILFGLGK
+CP11_SHEEP            AGFDTVTTAISWSLLYLVTSPRVQKKIQEELDAFILETFRHSSFIIFGLGK
+CP11_GuineaPig            AGFDTITTAISWSLLYLVMNPRIQKKIQEELDAFISEVFRYSSFTIFGLGK
+CP11_COD            AGFDTVSTALSWSVMYLVAHPEIQERLHQEIKAFIFEIFRHSSFMLFGMGK
+CP11_TROUT            AGFDTISTALSWAVVYLVAYPEIQERLHQELKAFILEIFRHSSFLVFGMDK
+CP11_ToadFish            AGFDTVSTGLSWSVMYLVAYPEIQERLYQEIKAFILEIFRHSSFMLFGLGK
+CP11_FlatFish            AGFDTVSTALSWSVMYLVAHPEIQERLYQEIEAFILEILRHSSFMAFGMGK
+CP11_BREAM            AGFDTISTALSWSVMYLVAYPEIQERLYQEMKAFILEIFRHSSFMVFGLGK
+CP11_SCUP            AGFDTISTALSWSVMYLVAYPEIQERLYQEMNAFILETFRHSSFMVFGMGK
+
+CP11_DOG            RKCCIGETIARLEVF
+CP11_MOUSE            RKCCIGETIGRSEVF
+CP11_HUMAN            RKCCIGETIARWEVF
+CP11_MONKEY            RKCCIGETIARWEVF
+CP11_HAMSTER            RKCCIGETIGRLEVF
+CP11_RABIT            RKCCIGETIGRLEVF
+CP11_RAT              RKCCIGETIGRLEVF
+CP11_SHEEP            RQCCIGEIIARLEVF
+CP11_GuineaPig            RRCCLGEVIGRWEVF
+CP11_COD            RRCCIGEMVARNEVF
+CP11_TROUT            RRCCIGEAIGRNEVF
+CP11_ToadFish            RRCCIGEVIARNEVF
+CP11_FlatFish            RRCCIGEVIARNEVY
+CP11_BREAM            RRCCIGEVIARNEVF
+CP11_SCUP            RRCCIGEVIARSEVF

SCIE2100_Practical4/MalS_select.aln

@@ -0,0 +1,29 @@
+(
+(
+(
+(
+CP11_DOG:0.0573186,
+CP11_SHEEP:0.0573186):0.0718983,
+(
+(
+(
+CP11_HUMAN:0.0234765,
+CP11_MONKEY:0.0234765):0.0416636,
+(
+(
+CP11_HAMSTER:0.0154805,
+CP11_MOUSE:0.0154805):0.0316513,
+CP11_RAT:0.0316513):0.0416636):0.0647976,
+CP11_RABIT:0.0647976):0.0718983):0.123896,
+CP11_GuineaPig:0.123896):0.23279,
+(
+(
+(
+CP11_COD:0.0662806,
+CP11_FlatFish:0.0662806):0.071057,
+(
+(
+CP11_ToadFish:0.0316513,
+CP11_BREAM:0.0316513):0.0489659,
+CP11_SCUP:0.0489659):0.071057):0.10074,
+CP11_TROUT:0.10074):0.23279):0.23279;