Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Jul 27, 2021

• Fix bug in CollectSamErrorMetrics (#1618)

  Show description for 5d30580
  

  mollysacks

  and

  Molly Sacks

  authored
  5d30580

  Copy full SHA for 5d30580

Commits on Jul 14, 2021

• fix: underflow in HaplotypeProbabilitiesFromContaminatorSequence (#1697)

  Show description for e7cda05
  

  Yossi Farjoun

  authored
  e7cda05

  Copy full SHA for e7cda05

Commits on Jul 7, 2021

• bugfix and nio access in Fingerprinting code (no need to panic) (#1694)

  Show description for 7172f0b
  

  Yossi Farjoun

  authored
  7172f0b

  Copy full SHA for 7172f0b

Commits on Jun 8, 2021

• Jc fix small data race condition (#1690)

  Show description for 77b9159
  

  Jay Carey

  authored
  77b9159

  Copy full SHA for 77b9159

• [bugfix] Pass MAX_RECORDS_IN_RAM to BasecallsConverter (#1687)

  

  Jay Carey

  authored
  8444642

  Copy full SHA for 8444642

Commits on Jun 7, 2021

• Only read the cbcl header once the tile is about to be cached and then close the streams. (#1686)

  Show description for 828cc4f
  

  Jay Carey

  authored
  828cc4f

  Copy full SHA for 828cc4f

Commits on May 27, 2021

• Added ref to software catalogs to citation section (#1606)

  Show description for adc953b
  smoe

  authored
  adc953b

  Copy full SHA for adc953b

• Adressing Integer comparison bug yeilding deflated rrna counts (#1680)

  thomas-watchmaker

  authored
  8224ad3

  Copy full SHA for 8224ad3

Commits on May 17, 2021

• Created CreateExtendedIlluminaManifest tool (#1667)

  Show description for 6ac2bc3
  gbggrant

  authored
  6ac2bc3

  Copy full SHA for 6ac2bc3

Commits on May 13, 2021

• SortGff tool (#1531)

  kachulis

  authored
  69e63f1

  Copy full SHA for 69e63f1

Commits on May 10, 2021

• Handle error case in interruptAndShutdownExecutors. (#1678)

  Show description for 26422df
  gbggrant

  authored
  26422df

  Copy full SHA for 26422df

Commits on May 1, 2021

• Allow for no barcode files case. (#1675)

  Show description for e6a2827
  gbggrant

  authored
  e6a2827

  Copy full SHA for e6a2827

Commits on Apr 30, 2021

• R Chart/PDF output filenames escape '%' with '%%' (#1671)

  Show description for 949d7f9
  alanhoyle

  authored
  949d7f9

  Copy full SHA for 949d7f9

Commits on Apr 28, 2021

• Add validation of existence of input directories (#1673)

  gbggrant

  authored
  b675e57

  Copy full SHA for b675e57

• [bugfix] Fix an issue with cbcl parsing when barcodes files are in a different directory from basecalls. (#1672)

  Show description for 0fd4218
  

  Jay Carey

  authored
  0fd4218

  Copy full SHA for 0fd4218

• Only run PR build, not the branch build (#1656)

  Show description for 380891c
  jessicaway

  authored
  380891c

  Copy full SHA for 380891c

Commits on Apr 14, 2021

• Fix: getCumulative R method optimized (#1659)

  Show description for 959411f
  

  Poshi

  and

  jessicaway

  authored
  959411f

  Copy full SHA for 959411f

Commits on Apr 8, 2021

• Throw an exception if one of the pooled threads has an error. (#1663)

  Show description for e88573f
  

  Jay Carey

  authored
  e88573f

  Copy full SHA for e88573f

Commits on Apr 6, 2021

• Delay data provider instantiation to avoid caching too many tiles when using cbcls. (#1658)

  Show description for 673ef0e
  

  Jay Carey

  authored
  673ef0e

  Copy full SHA for 673ef0e

Commits on Apr 1, 2021

• Added multi-lane support to BasecallsConverter (#1642)

  Show description for 6f728bf
  

  Jay Carey

  authored
  6f728bf

  Copy full SHA for 6f728bf

Commits on Mar 22, 2021

• Use AsyncWriterPool for Fastq writing. (#1645)

  Show description for 044bcda
  

  Jay Carey

  authored
  044bcda

  Copy full SHA for 044bcda

Commits on Mar 17, 2021

• Merge pull request #1651 from watchmaker-genomics/rz_rnaseqmetrics_parameterize_endbias_length

  Show description for eee472f
  gbggrant

  authored
  eee472f

  Copy full SHA for eee472f

• Merge branch 'master' into rz_rnaseqmetrics_parameterize_endbias_length

  ramsey-watchmaker

  authored
  c656396

  Copy full SHA for c656396

• Update to htsjdk 2.24.1 (#1655)

  Show description for 1af1395
  lbergelson

  authored
  1af1395

  Copy full SHA for 1af1395

• Merge branch 'rz_rnaseqmetrics_parameterize_endbias_length' of https://github.com/watchmaker-genomics/picard into rz_rnaseqmetrics_parameterize_endbias_length

  ramsey-watchmaker

  committed
  5ba27b7

  Copy full SHA for 5ba27b7

• 1. Added an additional constructor for RnaSeqMetricsCollector to be backwards compatible.

  Show description for f8fa136
  ramsey-watchmaker

  committed
  f8fa136

  Copy full SHA for f8fa136

Commits on Mar 16, 2021

• Merge branch 'master' into rz_rnaseqmetrics_parameterize_endbias_length

  ramsey-watchmaker

  authored
  ce2abb5

  Copy full SHA for ce2abb5

• 1. Spellcheck.

  ramsey-watchmaker

  committed
  22fe90c

  Copy full SHA for 22fe90c

• Add ConvertHaplotypeDatabaseToVcf clp (#1648)

  kachulis

  authored
  bda30d5

  Copy full SHA for bda30d5

• 1. Addressed test description comment.

  Show description for e7fe240
  ramsey-watchmaker

  committed
  e7fe240

  Copy full SHA for e7fe240

Commits on Mar 12, 2021

• 1. Updated test cases to derive from DataProvider

  Show description for 49aa58a
  ramsey-watchmaker

  committed
  49aa58a

  Copy full SHA for 49aa58a

Commits on Mar 11, 2021

• Change docker base image for security reasons. (#1654)

  gbggrant

  authored
  514d503

  Copy full SHA for 514d503

Commits on Mar 9, 2021

• Add sample -> individual map capability to CrosscheckFingerprints (#1643)

  kachulis

  authored
  2a806e7

  Copy full SHA for 2a806e7

Commits on Mar 5, 2021

• Updated the unit test to explicitly call the parameters for each case.

  ramsey-watchmaker

  committed
  dc23b2f

  Copy full SHA for dc23b2f

• Added an option to specify an end bias into a transcript replacing the constant PRIME_BASES (100 nt) variable. The default of this parameter set to the previous fixed value.

  Show description for c7188ab
  ramsey-watchmaker

  committed
  c7188ab

  Copy full SHA for c7188ab

Pagination

Previous

Next