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leviosam2 Public
Forked from milkschen/leviosam2Fast and accurate coordinate conversion between assemblies
C++ MIT License UpdatedAug 26, 2022 -
testing-proc-macros Public
Forked from ferrous-systems/testing-proc-macrosExample of structuring a proc macro crate for testability
Rust Apache License 2.0 UpdatedAug 24, 2022 -
IndexTools Public
Forked from dnanexus/IndexToolsIndexTools is a toolkit for extremely fast NGS analysis based on index files.
Python MIT License UpdatedAug 19, 2022 -
InstantTee Public
Forked from ArniDagur/InstantTeeRust implementation of the tee command using splice() and tee() Linux system calls. It is 4-5 times faster than GNU.
Rust MIT License UpdatedAug 15, 2022 -
career-ladder Public
Forked from aptonbio/career-ladderFramework for creating career ladders
Creative Commons Attribution 4.0 International UpdatedJul 5, 2022 -
bwa-meth Public
Forked from brentp/bwa-methfast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
PostScript MIT License UpdatedApr 20, 2022 -
ngsindex Public
Parsers for common NGS index formats (production)
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personal-genome-analysis Public
Guide to personal genome analysis, with code and workflows
Other UpdatedJan 21, 2022 -
fastq-vs-ubam Public
Compare speed of FASTQ vs uBAM for various applications
Python MIT License UpdatedJan 21, 2022 -
bookmark-cleaner Public
migrate from Chrome bookmarks to Raindrop
Python MIT License UpdatedJan 20, 2022 -
autoclick Public
Create Click-based CLIs from python3 type annotations (beta)
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Whole-Foods-Delivery-Slot Public
Forked from pcomputo/Whole-Foods-Delivery-SlotAutomated script for Whole Foods and Amazon Fresh delivery slot
Python UpdatedJan 20, 2022 -
sbpack Public
Forked from rabix/sbpackCommand line utility to pack and upload/download CWL to/from SB powered platform
Python Apache License 2.0 UpdatedJan 12, 2022 -
bwa-postalt-rs Public
Reimplementation of BWA alt-aware post-processing in Rust
GNU General Public License v3.0 UpdatedJan 3, 2022 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedJul 7, 2021 -
cwltool Public
Forked from common-workflow-language/cwltoolCommon Workflow Language reference implementation
Python Apache License 2.0 UpdatedMar 8, 2021 -
pokrok Public
Use any progress bar package with a simple API (production)
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dxcompiler-compile-action Public
A GitHub action to compile a WDL workflow using dxCompiler
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wdltools-feedstock Public
Forked from conda-forge/wdltools-feedstockA conda-smithy repository for wdltools.
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 18, 2021 -
audiodrama Public
My audio drama feeds OPML
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miniwdl Public
Forked from chanzuckerberg/miniwdlWorkflow Description Language developer tools & local runner
Python MIT License UpdatedDec 6, 2020 -
cwljava Public
Forked from common-workflow-language/cwljavaJava SDK for CWL
Java UpdatedOct 19, 2020 -
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dx_app_builder Public
Forked from yinxx/dx_app_builderApps to build your app/applet/asset from source in a containerized environment.
Python Apache License 2.0 UpdatedSep 15, 2020 -
gatk4-germline-snps-indels Public
Forked from gatk-workflows/gatk4-germline-snps-indelsWorkflows for germline short variant discovery with GATK4
WDL BSD 3-Clause "New" or "Revised" License UpdatedJul 21, 2020 -
awesome-nextflow Public
Forked from nextflow-io/awesome-nextflowA curated list of nextflow based pipelines
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ngstream Public
Simple reading/streaming of NGS reads from SRA. (alpha)
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wdl Public
Forked from openwdl/wdlWorkflow Description Language - Specification and Implementations
Java BSD 3-Clause "New" or "Revised" License UpdatedJun 24, 2020 -
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hon Public
An opinionated Python project management tool (pre-alpha)