Can't continue after import errors at /home/ubuntu/bin/mashtree_bootstrap.pl line 26.

[MHassanSaeed]

Hi,

Can you see the script here:

I was running the following command:
mashtree_bootstrap.pl --reps 100 --numcpus 12 *.fna -- --min-depth 0 > abc.dnd

[lskatz]

That's very strange, that the module packaged with mashtree doesn't have that subroutine. My best guess is that you have a combination of the older and newer version installed.

[MHassanSaeed]

This is what I am getting now after running:
mashtree_bootstrap.pl --reps 100 --numcpus 12 *.fna -- --min-depth 0 > abc.dnd

perl: warning: Falling back to the standard locale ("C").
mashtree: main: Found mash version 2 - /home/ubuntu/bin/mash
mashtree: main: Temporary directory will be /tmp/MASHTREE_BOOTSTRAP.5caX2W/observed
mashtree: main: mashtree on 173 files
mashtree: main::main: ERROR: I could not find reads path at Enterococcus
Stopped at /home/ubuntu/bin/mashtree line 107.
mashtree_bootstrap.pl: main::main: Died
Stopped at /home/ubuntu/bin/mashtree_bootstrap.pl line 104.