updated pydra tasks mrtrix3 version in docs to 3.1

Author: tclose

docs/source/explanation/conditional-lazy.rst

@@ -13,7 +13,7 @@ Lazy fields
 
 Pydra workflows are constructed by the assignment of "lazy field" placeholders from
 the outputs of upstream nodes to the inputs of downstream nodes. These placeholders,
-which are instances of the :class:`pydra.engine.specs.LazyField` class, are replaced
+which are instances of the :class:`pydra.engine.lazy.LazyField` class, are replaced
 by the actual values they represent when the workflow is run.
 
 

docs/source/reference/api.rst

@@ -25,10 +25,10 @@ Workflows
    :undoc-members:
    :show-inheritance:
 
-Specification classes
----------------------
+Engine classes
+--------------
 
-.. automodule:: pydra.engine.specs
+.. automodule:: pydra.engine
    :members:
    :undoc-members:
    :show-inheritance:

docs/source/tutorial/1-getting-started.ipynb

@@ -151,7 +151,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from pydra.tasks.mrtrix3.v3_0 import MrGrid\n",
+    "from pydra.tasks.mrtrix3.v3_1 import MrGrid\n",
     "\n",
     "# Instantiate the task, \"splitting\" over all NIfTI files in the test directory\n",
     "# by splitting the \"input\" input field over all files in the directory\n",
@@ -236,7 +236,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from pydra.tasks.mrtrix3.v3_0 import MrGrid\n",
+    "from pydra.tasks.mrtrix3.v3_1 import MrGrid\n",
     "\n",
     "if (\n",
     "    __name__ == \"__main__\"\n",

docs/source/tutorial/2-advanced-execution.ipynb

@@ -191,7 +191,7 @@
     "from pprint import pprint\n",
     "from fileformats.medimage import Nifti1\n",
     "from pydra.engine.submitter import Submitter\n",
-    "from pydra.tasks.mrtrix3.v3_0 import MrGrid\n",
+    "from pydra.tasks.mrtrix3.v3_1 import MrGrid\n",
     "\n",
     "# Make a temporary directory\n",
     "test_dir = Path(tempfile.mkdtemp())\n",
@@ -323,7 +323,7 @@
    "outputs": [],
    "source": [
     "import tempfile\n",
-    "from pydra.tasks.mrtrix3.v3_0 import MrGrid\n",
+    "from pydra.tasks.mrtrix3.v3_1 import MrGrid\n",
     "from pydra.environments import docker\n",
     "\n",
     "test_dir = tempfile.mkdtemp()\n",

docs/source/tutorial/6-workflow.ipynb

@@ -484,7 +484,7 @@
     "import fileformats.medimage_mrtrix3 as mrtrix3\n",
     "from pydra.environments import docker\n",
     "from pydra.compose import workflow, python\n",
-    "from pydra.tasks.mrtrix3.v3_0 import MrConvert, MrThreshold\n",
+    "from pydra.tasks.mrtrix3.v3_1 import MrConvert, MrThreshold\n",
     "\n",
     "MRTRIX2NUMPY_DTYPES = {\n",
     "    \"Int8\": np.dtype(\"i1\"),\n",