Releases · nipype/pydra · GitHub

06 May 04:47

djarecka

0.15

fixing copyfile input
adding flexibility to position of the shell task fields
Simplify output_spec definition and population
Various adjustments to ShellCommandTask
adding full traceback to the error files
updating Ubuntu for CI
fixing templates with float formatting and multiple fields
fixing hashing function for numpy objects
fixing call function for Workflow
adding container dimension concept to the split method
adding LazyField for MultiInputFiles
fixing issues with SoftFileLock with asyncio
style and black updates
fixing connections with multiple inputs

Assets 2

16 Feb 05:22

djarecka

0.14.1

reverting some changes to hash_value function, the part for arbitrary object didn't work well

Assets 2

15 Feb 15:05

djarecka

0.14

fixing MultiInputObject in the input_spec
fixing numpy objects hashing
small improvements to the run method for Workflow (moving some part to the softlock file block)

Assets 2

13 Jan 17:27

djarecka

0.13

changing the way of getting event loop with asyncio - more robust solution that should work even if get_event_loop raise an error
adding option to specify a name of Directory using output_file_template

Assets 2

16 Dec 19:46

djarecka

0.12.1

fixing TaskBase.__call__ so submitter is not overwritten
improving checksum_states so it doesn't calculate the content hash of big files for multiple times (using files_hash that keeps track of all the files)
removing output after task is run to save memory
adding Directory, int, float, bool, str, and list to the types allowed by output_spec of ShelloCommandTask.
adding python 3.9 to GA
fixing GA singularity workflow

Assets 2

02 Dec 17:24

djarecka

0.12

removing checksum from submitter and workers to avoid hash calculation before running the tasks (using uid instead)
saving the hash values for files to avoid content hash recalculation (the content is recalculated only if the time of the last modification has changed)
adding MultiInputFile and MultiOutputFile to the pydra special types
fixing environment variable for GithubAction CI
fixing input_spec for ShellCommandTask with the container_info, spec bases has to be changed DockerSpec or SingularitySpec in order to be used by Docker/SingularityTask
fixing automatic binding detections for ContainerTask that have files as input (is_local_file is now slightly more robust that work for input that has more complex type in the spec)
expanding callable function used in field metadata, it can now use output_dir, entire inputs object or a specific field from the inputs

Assets 2

11 Nov 04:20

djarecka

0.11

fixing issues with quadratic memory increase for workflows with big splitters - removing state_inputs from Task (not used anymore)
allowing for directory with broken symlinks for an input
fixing tests so could be run on a cluster (using tmpdir as a cache_dir, so pytest can be run with --basetemp)
fixing cache_Dir setting for worflows used as nodes
fixing Submitter._run_workflow so it doesn't stop when there are still tasks in the graph, will try getting runnable tasks for another 60s (in case the previous tasks finished, but the results are still not available to read)
fixing template formatting for files from ShellCommandTask, so it works for directories that have dots in the name
fixing tests that were resubmitting tasks to the queue

Assets 2

07 Oct 03:18

djarecka

0.10

disable etelemetry in tests
removing old pip (10.0.1) from testing (removing testallowfail from GA workflows)
removing min_requirements
adding rescheduling to the slurm worker for all jobs that are CANCELLED, TIMEOUT, or PREEMPTED
adding generate_output_updates, to be able to predict names of the generated outputs before running

Assets 2

26 Sep 20:32

satra

Minor setup changes

allows README to be displayed on pypi
limits testing to valid pytests

Assets 2

24 Sep 11:46

satra

0.9.1

fixing issue with checksum_states performance (it doesn't run self.state.prepare_states if not needed)

Assets 2