in pileup call remove_B()

Heng Li · Heng Li · commit 454da4754ac5 · 2011-12-02T00:20:22.000-05:00
diff --git a/bam_plcmd.c b/bam_plcmd.c
@@ -541,6 +541,7 @@ int bam_mpileup(int argc, char *argv[])
 		fprintf(stderr, "Notes: Assuming diploid individuals.\n\n");
 		return 1;
 	}
+	bam_no_B = 1;
     if (file_list) {
         if ( read_file_list(file_list,&nfiles,&fn) ) return 1;
         mpileup(&mplp,nfiles,fn);

Original file line number	Diff line number	Diff line change
`@@ -541,6 +541,7 @@ int bam_mpileup(int argc, char *argv[])`
`541`	`541`	`fprintf(stderr, "Notes: Assuming diploid individuals.\n\n");`
`542`	`542`	`return 1;`
`543`	`543`	`}`
	`544`	`+ bam_no_B = 1;`
`544`	`545`	`if (file_list) {`
`545`	`546`	`if ( read_file_list(file_list,&nfiles,&fn) ) return 1;`
`546`	`547`	`mpileup(&mplp,nfiles,fn);`