File tree Expand file tree Collapse file tree 1 file changed +4
-3
lines changed Expand file tree Collapse file tree 1 file changed +4
-3
lines changed Original file line number Diff line number Diff line change @@ -4,10 +4,11 @@ The official SAMtools repository can be found at: http://samtools.sourceforge.ne
44## Major fixes:
55 - added "samtools sample" command, to sample reads from a SAM/BAM file at a given frequency.
66 - added "samtools qa" command, to compute the mean and median coverage, as well a histogram
7- from 1 to N (defined by param) containing the number of bases covered a maximum of 1X, 2X...NX.
8- Furthermore, "other" information is also available in the output file, namely:
7+ from 1 to N (defined by param) containing the number of bases covered a maximum of 1X, 2X...NX.
8+ Furthermore, "other" information is also available in the output file, namely:
99 - Total number of reads
10- - Total number of duplicates found and ignored (duplicates are "found" based on the sam flag and are ignored in the counting of coverage)
10+ - Total number of duplicates found and ignored (duplicates are "found" based on the sam flag
11+ and are ignored in the counting of coverage)
1112 - Percentage of unmapped reads
1213 - Percentage of zero quality mappings
1314 - Number of proper paired reads (based on sam flag of proper pairs)
You can’t perform that action at this time.
0 commit comments