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34 results • Page 1 of 1
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Answer: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by Michael Love 43k
We are still working on adding tidyomics syntax to operate on the rowRanges of a ranged SE without breaking it off and using *plyranges*. …
Answer: limma duplicateCorrelation appropriate where some blocks cross condition and som by Gordon Smyth 52k
You ask a good question. Twin pairs are generally a very powerful way to control for genetic and environmental differences. duplicateCorrel…
Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0
Thank you for the context and the preprint!
Comment: How to load scRNA-seq data from GEO by petergrahamclark ▴ 10
Also I understood with glmGamPoi (as an option of deseq) you didn't have to do psudobulk? That deseq could handel the raw reads? is that no…
Answer: Workflow to Analyse DNA Sequence specify gene expression in a fungus under stres by Michael Love 43k
Check the workflow which addresses your Q1: https://bioconductor.org/packages/release/workflows/vignettes/rnaseqGene/inst/doc/rnaseqGene…
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Comment: limma::voom vs edgeR::voomLmFit - when to use?
Answer: How to load scRNA-seq data from GEO
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Answer: Biomart server error
Answer: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
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