A toolkit for processing, analyzing, and managing optical pooled screening (OPS) image data.

Find profile pairs and compute metrics between them.

Compendium of tools for the Imaging Platform

Images and other data from the JUMP Cell Painting Consortium

Code for Grigalunas, Burhop, Zinken et al. (2021)

Keras package for deep residual networks

Keras package for region-based convolutional neural networks (RCNNs)

a python module to download Broad Bioimage Benchmark Collection images

A web application for classifying objects

This repository is an attempt to list all malaria parasite imaging datasets (blood smears). Contributions welcome!

Kaggle Data Science Bowl 2018 dataset fixes

Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.

Open-source software for exploring and analyzing large, high-dimensional image-derived data.

An open-source application for biological image analysis