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A toolkit for processing, analyzing, and managing optical pooled screening (OPS) image data.

Python 6 6 Updated Jun 25, 2025

Find profile pairs and compute metrics between them.

Python 17 8 Updated Jun 30, 2025

Compendium of tools for the Imaging Platform

Python 12 3 Updated Jul 1, 2025

Images and other data from the JUMP Cell Painting Consortium

Shell 173 18 Updated Jul 1, 2025

Code for Grigalunas, Burhop, Zinken et al. (2021)

Jupyter Notebook 8 3 Updated Feb 10, 2021

Keras package for deep residual networks

Python 302 124 Updated Jan 15, 2023

Keras package for region-based convolutional neural networks (RCNNs)

Python 554 220 Updated May 20, 2020

a python module to download Broad Bioimage Benchmark Collection images

Python 24 Updated Mar 15, 2019

A web application for classifying objects

TypeScript 29 12 Updated Nov 23, 2021

This repository is an attempt to list all malaria parasite imaging datasets (blood smears). Contributions welcome!

58 15 Updated Nov 25, 2019

Kaggle Data Science Bowl 2018 dataset fixes

Python 134 20 Updated Apr 3, 2018

Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.

Python 41 26 Updated Jun 11, 2025

Open-source software for exploring and analyzing large, high-dimensional image-derived data.

Python 155 74 Updated Aug 15, 2024
1 Created Nov 22, 2011

An open-source application for biological image analysis

Python 997 395 Updated Jul 2, 2025