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Arc Research Institute

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  1. evo2 evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 2.9k 317

  2. arc-virtual-cell-atlas arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    Jupyter Notebook 345 33

  3. state state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    Python 210 31

  4. xsra xsra Public

    An efficient CLI to extract sequences from the SRA

    Rust 108 8

  5. SRAgent SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 95 21

  6. binseq binseq Public

    A high efficiency binary format for sequencing data

    Rust 59 5

Repositories

Showing 10 of 25 repositories
  • SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    ArcInstitute/SRAgent’s past year of commit activity
    Python 95 MIT 21 1 1 Updated Jul 6, 2025
  • state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    ArcInstitute/state’s past year of commit activity
    Python 210 31 19 9 Updated Jul 4, 2025
  • bqtools Public

    A command line utilty for working with BINSEQ files

    ArcInstitute/bqtools’s past year of commit activity
    Rust 21 1 5 0 Updated Jul 3, 2025
  • cell-load Public

    dataloaders for state-sets models

    ArcInstitute/cell-load’s past year of commit activity
    Python 8 MIT 2 7 2 Updated Jul 2, 2025
  • binseq Public

    A high efficiency binary format for sequencing data

    ArcInstitute/binseq’s past year of commit activity
    Rust 59 5 2 0 Updated Jul 1, 2025
  • cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    ArcInstitute/cell-eval’s past year of commit activity
    Python 42 MIT 6 5 0 Updated Jul 1, 2025
  • xsra Public

    An efficient CLI to extract sequences from the SRA

    ArcInstitute/xsra’s past year of commit activity
    Rust 108 8 4 0 Updated Jun 25, 2025
  • state-reproduce Public

    Reproduce analyses and baselines from the State paper

    ArcInstitute/state-reproduce’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Jun 23, 2025
  • evo2 Public

    Genome modeling and design across all domains of life

    ArcInstitute/evo2’s past year of commit activity
    Jupyter Notebook 2,924 Apache-2.0 317 25 4 Updated Jun 20, 2025
  • pdex Public

    parallel differential expression for single-cell perturbation sequencing

    ArcInstitute/pdex’s past year of commit activity
    Python 3 MIT 0 2 0 Updated Jun 18, 2025

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