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Genome modeling and design across all domains of life
Jupyter Notebook 2.8k 292
Arc Virtual Cell Atlas
Jupyter Notebook 284 27
An efficient CLI to extract sequences from the SRA
Rust 95 6
LLM agents for working with the SRA and associated bioinformatics databases.
Python 83 15
A high efficiency binary format for sequencing data
Rust 49 2
Flexible analysis of high-content CRISPR screening
Python 31 6
parallel differential expression for single-cell perturbation sequencing
Calcium imaging analysis Nextflow pipeline for the Arc Institute
Nextflow pipeline to re-process all public single-cell RNA-seq data
Rust bindings to NCBI-VDB to interact with SRA files programmatically
A minimap2 implementation with binseq inputs
C and C++ Bindings to the BINSEQ library
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