inferring regulatory cellular dynamics

A data framework for biology.

Truly independent web browser

https://sparrow-pipeline.readthedocs.io/en/latest/

10x Genomics Single Cell Analysis

End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR

Perturbation Analysis in the scverse ecosystem.

Code used to benchmark Xenium

Python package for Probe set selection for targeted spatial transcriptomics.

https://www.sc-best-practices.org

Python implementation of the SuperExactTest package

Develop custom oligo design pipelines.

nucleic acid folding

Formalizing and benchmarking open problems in single-cell genomics

data and model repository for single-cell data

Single-cell analysis in Python. Scales to >100M cells.

Spatial Single Cell Analysis in Python