Avian Flu Subtyping UI

A repository for collecting GPU basecalling stats

🔬 Path to a free self-taught education in Bioinformatics!

Dioxus Components for DaisyUI

Rust port of Lucide with support for Dioxus, Leptos and Yew.

Adaptive sampling client for nanopore devices; a streamy relative of Readfish

Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data

Overview of our data for microbial genomic benchmarking

Dorado Documentation

quality filtering tool for long reads

Create statistic summary of an Oxford Nanopore read dataset

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

Identification of differential RNA modifications from nanopore direct RNA sequencing

Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

Efficient, parallel compression for terabyte-scale data

GPU CTC decoding for nanopore basecalling

Protobuf and gRPC specifications for the MinKNOW API

A program for assessing the T2T genome continuity

Read-based phasing of genomic variants, also called haplotype assembly

Nextflow pipeline to process long read ONT and/or pacbio HiFi data

Super-fast and accurate demultiplexing of direct RNA-seq runs.

A bioinformatics tool for viewing and reporting base modification frequencies from BAM files

Control test data set for ROBIN

Tandem repeat expansion detection or genotyping from long-read alignments

A GlobalProtect VPN client for Linux, written in Rust, based on OpenConnect and Tauri, supports SSO with MFA, Yubikey, and client certificate authentication, etc.

A tool for somatic structural variant calling using long reads

Bioinformatics I/O libraries in Rust

Generate random test data for bioinformatics