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neurodocker generate respects order of arguments when generating Dockerfile.
Default entrypoint bash script is used (/neurodocker/startup.sh), and packages shell files are sourced there. This eliminates the need for some ENV layers.
Add options --user, --install, --env, --expose. Options can be used multiple times.
Use git describe for neurodocker version.
Test software packages as non-root user.
Update testing to only build Docker image if the Dockerfile has changed.
Fix whiteout file issue in Miniconda installation.