A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.

Useful bash one-liners for bioinformatics.

Polygenic score calculation from VCF in Nim.

hybrid assembly pipeline for bacterial genomes

genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF

A (mostly) universal methylation extractor for BS-seq experiments.

A Rmarkdown editor with instant preview

See:

create, manage, and upload track hubs for use in the UCSC genome browser

significance testing over interval overlaps

a package to handle ChromHMM (http://compbio.mit.edu/ChromHMM/) and similar segmentation models in R

R imgur API Client

CGAT-ruffus is a lightweight python module for running computational pipelines

Resumes generated using the GitHub informations

Multiscale representation of genomic signals

fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome

methylation sequence data quality assessment tool

A program for summarising CpG methylation patterns

Spec for R coffee-script

Writing reviews of academic papers

A multiplayer plugin for KMP

collection of small scripts or how-tos that don't fall under a separate project

RhythmBox plugin allowing to create playlist based on a Last.fm play log

RhythmBox plugin allowing to create playlist based on a Last.fm play log

Mirror of the new bioconductor svn for Repitools

Tools for producing pseudo-cgh of next-generation sequencing data

GimmeMotifs is a de novo motif prediction pipeline, especially suited for ChIP-seq datasets. It incorporates several existing motif prediction algorithms in an ensemble method to predict motifs and…

A git version of our Repitools R package (the R-forge svn version will *always* be more up do date)

Alignment and Tabulation of BiSulfite Treated Reads