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Garvan Institute of Medical Research
- Sydney, Australia
Stars
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
A (mostly) universal methylation extractor for BS-seq experiments.
create, manage, and upload track hubs for use in the UCSC genome browser
a package to handle ChromHMM (http://compbio.mit.edu/ChromHMM/) and similar segmentation models in R
CGAT-ruffus is a lightweight python module for running computational pipelines
Resumes generated using the GitHub informations
fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
collection of small scripts or how-tos that don't fall under a separate project
astatham / PlayLast.fm
Forked from broussea/PlayLast.fmRhythmBox plugin allowing to create playlist based on a Last.fm play log
RhythmBox plugin allowing to create playlist based on a Last.fm play log
Mirror of the new bioconductor svn for Repitools
Tools for producing pseudo-cgh of next-generation sequencing data
astatham / gimmemotifs
Forked from vanheeringen-lab/gimmemotifsGimmeMotifs is a de novo motif prediction pipeline, especially suited for ChIP-seq datasets. It incorporates several existing motif prediction algorithms in an ensemble method to predict motifs and…
A git version of our Repitools R package (the R-forge svn version will *always* be more up do date)