- Zhao Y, et al. Robust EMI elimination for RF shielding-free MRI through deep learning direct MR signal prediction. Magn Reson Med. 2024. doi: 10.1002/mrm.30046.
- Sample data are available for replicating the EMI elimination results of simulated brain data in Figure 2.
- Deep-DSP model training and test can be run via "python DeepDSP.pyo".
- A typical training time for provided dataset is around 5mins.
- The trained model and results are also provided.
- The demo codes were tested on Python 3.8.3 installed on Ubuntu 18.04.5 LTS (Linux 5.4.0-77-generic). More details can be found in Software dependencies section.
Package Version
alabaster 0.7.12
albumentations 1.1.0
anaconda-client 1.7.2
anaconda-navigator 1.9.12
anaconda-project 0.8.3
argh 0.26.2
asn1crypto 1.3.0
astroid 2.3.3
astropy 4.0
atomicwrites 1.3.0
attrs 19.3.0
autopep8 1.4.4
Babel 2.8.0
backcall 0.1.0
backports.functools-lru-cache 1.6.1
backports.shutil-get-terminal-size 1.0.0
backports.tempfile 1.0
backports.weakref 1.0.post1
beautifulsoup4 4.8.2
bitarray 1.2.1
bkcharts 0.2
bleach 3.1.0
blessings 1.7
bokeh 1.4.0
boto 2.49.0
Bottleneck 1.3.2
certifi 2019.11.28
cffi 1.14.0
chardet 3.0.4
Click 7.0
cloudpickle 1.3.0
clyent 1.2.2
colorama 0.4.3
conda 4.8.5
conda-build 3.18.11
conda-package-handling 1.7.0
conda-verify 3.4.2
contextlib2 0.6.0.post1
cryptography 2.8
cycler 0.10.0
Cython 0.29.15
cytoolz 0.10.1
dask 2.11.0
decorator 4.4.1
defusedxml 0.6.0
diff-match-patch 20181111
distributed 2.11.0
docutils 0.16
entrypoints 0.3
et-xmlfile 1.0.1
fastcache 1.1.0
filelock 3.0.12
flake8 3.7.9
Flask 1.1.1
fsspec 0.6.2
future 0.18.2
gevent 1.4.0
glob2 0.7
gmpy2 2.0.8
gpustat 0.6.0
greenlet 0.4.15
h5py 2.10.0
HeapDict 1.0.1
html5lib 1.0.1
hypothesis 5.5.4
idna 2.8
imageio 2.6.1
imagesize 1.2.0
imgaug 0.4.0
importlib-metadata 1.5.0
intervaltree 3.0.2
ipykernel 5.1.4
ipython 7.12.0
ipython-genutils 0.2.0
ipywidgets 7.5.1
isort 4.3.21
itsdangerous 1.1.0
jdcal 1.4.1
jedi 0.14.1
jeepney 0.4.2
Jinja2 2.11.1
joblib 0.14.1
json5 0.9.1
jsonschema 3.2.0
jupyter 1.0.0
jupyter-client 5.3.4
jupyter-console 6.1.0
jupyter-core 4.6.1
jupyterlab 1.2.6
jupyterlab-server 1.0.6
Keras 2.4.3
keyring 21.1.0
kiwisolver 1.1.0
lazy-object-proxy 1.4.3
libarchive-c 2.8
lief 0.9.0
llvmlite 0.31.0
locket 0.2.0
lxml 4.5.0
MarkupSafe 1.1.1
matplotlib 3.1.3
mccabe 0.6.1
mistune 0.8.4
mkl-fft 1.0.15
mkl-random 1.1.0
mkl-service 2.3.0
mock 4.0.1
more-itertools 8.2.0
mpmath 1.1.0
msgpack 0.6.1
multipledispatch 0.6.0
navigator-updater 0.2.1
nbconvert 5.6.1
nbformat 5.0.4
networkx 2.4
nibabel 3.2.0
nltk 3.4.5
nose 1.3.7
notebook 6.0.3
numba 0.48.0
numexpr 2.7.1
numpy 1.18.1
numpydoc 0.9.2
nvidia-ml-py3 7.352.0
olefile 0.46
opencv-python 4.5.1.48
opencv-python-headless 4.5.3.56
openpyxl 3.0.3
packaging 20.1
pandas 1.0.1
pandocfilters 1.4.2
parso 0.5.2
partd 1.1.0
path 13.1.0
pathlib2 2.3.5
pathtools 0.1.2
patsy 0.5.1
pep8 1.7.1
pexpect 4.8.0
pickleshare 0.7.5
Pillow 7.0.0
pip 20.0.2
pkginfo 1.5.0.1
pluggy 0.13.1
ply 3.11
progressbar 2.5
prometheus-client 0.7.1
prompt-toolkit 3.0.3
psutil 5.6.7
ptyprocess 0.6.0
py 1.8.1
pycodestyle 2.5.0
pycosat 0.6.3
pycparser 2.19
pycrypto 2.6.1
pycurl 7.43.0.5
pydocstyle 4.0.1
pyflakes 2.1.1
Pygments 2.5.2
pylint 2.4.4
pynufft 2020.2.6
pyodbc 4.0.0-unsupported
pyOpenSSL 19.1.0
pyparsing 2.4.6
pyrsistent 0.15.7
PySocks 1.7.1
pytest 5.3.5
pytest-arraydiff 0.3
pytest-astropy 0.8.0
pytest-astropy-header 0.1.2
pytest-doctestplus 0.5.0
pytest-openfiles 0.4.0
pytest-remotedata 0.3.2
python-dateutil 2.8.1
python-jsonrpc-server 0.3.4
python-language-server 0.31.7
pytz 2019.3
PyWavelets 1.1.1
pyxdg 0.26
PyYAML 5.3
pyzmq 18.1.1
QDarkStyle 2.8
QtAwesome 0.6.1
qtconsole 4.6.0
QtPy 1.9.0
qudida 0.0.4
requests 2.22.0
rope 0.16.0
Rtree 0.9.3
ruamel-yaml 0.15.87
scikit-image 0.16.2
scikit-learn 0.22.1
scipy 1.4.1
seaborn 0.10.0
SecretStorage 3.1.2
Send2Trash 1.5.0
setuptools 45.2.0.post20200210
Shapely 1.7.1
simplegeneric 0.8.1
singledispatch 3.4.0.3
six 1.14.0
snowballstemmer 2.0.0
sortedcollections 1.1.2
sortedcontainers 2.1.0
soupsieve 1.9.5
Sphinx 2.4.0
sphinxcontrib-applehelp 1.0.1
sphinxcontrib-devhelp 1.0.1
sphinxcontrib-htmlhelp 1.0.2
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 1.0.2
sphinxcontrib-serializinghtml 1.1.3
sphinxcontrib-websupport 1.2.0
spyder 4.0.1
spyder-kernels 1.8.1
SQLAlchemy 1.3.13
statsmodels 0.11.0
sympy 1.5.1
tables 3.6.1
tblib 1.6.0
terminado 0.8.3
testpath 0.4.4
toolz 0.10.0
torch 1.8.1+cu111
torchaudio 0.8.1
torchvision 0.9.1+cu111
tornado 6.0.3
tqdm 4.42.1
traitlets 4.3.3
typing-extensions 3.7.4.3
ujson 1.35
unicodecsv 0.14.1
unwrap 0.1.1
urllib3 1.25.8
watchdog 0.10.2
wcwidth 0.1.8
webencodings 0.5.1
Werkzeug 1.0.0
wheel 0.34.2
widgetsnbextension 3.5.1
wrapt 1.11.2
wurlitzer 2.0.0
xlrd 1.2.0
XlsxWriter 1.2.7
xlwt 1.3.0
xmltodict 0.12.0
yapf 0.28.0
zict 1.0.0
zipp 2.2.0