A multiscale cellular architecture visualization toolkit.

Extract clean conversation logs from Claude Code's internal storage

This package provides a unified entry point and organized task modules for managing N5/Zarr dataset conversions and downsampling. It centralizes your workflow into a single pipeline to reduce manua…

GPU-based 3D non-rigid volumetric registration

Streaming directly to Zarr on the file system or S3

IGNORE ME!! 🙈

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our …

🔍 A Hex Editor for Reverse Engineers, Programmers and people who value their retinas when working at 3 AM.

FFMPEG Assembly Language Lessons

Open-source, cloud-native transactional tensor storage engine

[NeurIPS 2024] Deep Learning in Medical Image Registration: Magic or Mirage?

Download and parse data from Garmin Connect or a Garmin watch, FitBit CSV, and MS Health CSV files into and analyze data in Sqlite serverless databases with Jupyter notebooks.

An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data

Iconic font aggregator, collection, & patcher. 3,600+ icons, 50+ patched fonts: Hack, Source Code Pro, more. Glyph collections: Font Awesome, Material Design Icons, Octicons, & more

Tetris in sed

A minimal Python package for reading OME-Zarr (meta)data

Loading and handling microscopy data in blender

An AFM image analysis program to batch process data and obtain statistics from images

A feature-rich command-line audio/video downloader

Utilities intended for use with Llama models.

trying out different things with zarr

making montage or combine tiff images of different sizes

Reconstruct big images from overlapping tiled images on a Spark cluster.

Hitchhiker's Guide to Logical Verification (2023 Edition)

Conversion between spatial transformations of various formats / parametrizations