1.0.0

2025-06-02 (Date of Last Commit)

3.6.1

2025-05-27 (Date of Last Commit)

• Increased the ulimit in the STARsoloFastq task in the StarAlign.wdl to 10000; this does not affect the outputs of the pipeline

2.1.2

2025-05-27 (Date of Last Commit)

• Increased the ulimit in the STARsoloFastq task in the StarAlign.wdl to 10000; this does not affect the outputs of the pipeline

8.0.1

2025-05-27 (Date of Last Commit)

• Increased the ulimit in the STARsoloFastq task in the StarAlign.wdl to 10000; this does not affect the outputs of the pipeline

6.0.3

25-05-27 (Date of Last Commit)

• Increased the ulimit in the STARsoloFastq task in the StarAlign.wdl to 10000; this does not affect the outputs of the pipeline

2.2.1

2025-05-27 (Date of Last Commit)

• Increased the ulimit in the STARsoloFastq task in the StarAlign.wdl to 10000; this does not affect the outputs of the pipeline

3.3.4

2025-02-21 (Date of Last Commit)

• Updated HaplotypeCaller_GATK4_VCF to use MEM_SIZE and MEM_UNIT; this does not affect the outputs of this pipeline

3.3.4

2025-02-12 (Date of Last Commit)

• Updated HaplotypeCaller_GATK4_VCF to use MEM_SIZE and MEM_UNIT; this does not affect the outputs of this pipeline

2.2.5

2025-02-21 (Date of Last Commit)

• Updated HaplotypeCaller_GATK4_VCF to use MEM_SIZE and MEM_UNIT; this does not affect the outputs of this pipeline

1.2.0

2025-03-17 (Date of Last Commit)

• Updated Picard docker for CompareMetrics from 2.20.4-SNAPSHOT to 2.26.10-SNAPSHOT to fix security vulnerability. The outputs of the CollectAggregationMetrics task have changed slightly: .alignment_summary_metrics now have additional columns SD_READ_LENGTH, MEDIAN_READ_LENGTH, MAD_READ_LENGTH, MIN_READ_LENGTH, MAX_READ_LENGTREADS_ALIGNED_IN_PAIRS, PCT_SOFTCLIP, PCT_HARDCLIP, AVG_POS_3PRIME_SOFTCLIP_LENGTH. Additionally, a histogram is now included in the .alignment_summary_metrics file