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Pull requests: coderefinery/software

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Pull requests list

update software environment
#43 by bast was merged Apr 8, 2025 Loading…
do not cache between builds; closes #41
#42 by bast was merged Apr 5, 2025 Loading…
in readme recommend miniforge instead of anaconda or miniconda
#40 by bast was merged Apr 22, 2025 Loading…
Bump jupyterlab-git from 0.50.0 to 0.51.1 dependencies Pull requests that update a dependency file python Pull requests that update python code
#39 by dependabot bot was closed Apr 5, 2025 Loading…
@bast
2
Use almost latest snakemake
#38 by samumantha was closed Apr 5, 2025 • Draft
@bast
4
Try setup-miniconda v3
#37 by rantahar was merged Sep 29, 2024 Loading…
1
Add sphinx-autodoc2 to the environment
#36 by rantahar was merged Oct 26, 2024 Loading…
3
Bump jupyterlab from 4.1.2 to 4.2.5 dependencies Pull requests that update a dependency file
#35 by dependabot bot was closed Sep 1, 2024 Loading…
1
update environment to use latest current versions
#34 by bast was merged Mar 5, 2024 Loading…
2
Bump Snakemake version to 8.5.3
#33 by samumantha was closed Mar 5, 2024 • Draft
3
Bump jupyterlab from 3.6.3 to 3.6.7 dependencies Pull requests that update a dependency file
#32 by dependabot bot was closed Mar 5, 2024 Loading…
1
Add pytest-cov, closes coderefinery/testing#200
#31 by rkdarst was merged Aug 24, 2023 Loading…
Update after conda upgrade --all
#30 by rkdarst was merged Aug 23, 2023 Loading…
jupyter labextension/serverextension not needed for jupyterlab_git?
#29 by bast was merged Mar 7, 2023 Loading…
1
Include a test of an actual Sphinx build
#28 by rkdarst was merged Feb 20, 2023 Loading…
Test python 3.9-3.11 on pip, and 3.11 on conda
#27 by rkdarst was merged Feb 20, 2023 Loading…
1
Update environment.yml
#26 by ruokolt was merged Feb 20, 2023 Loading…
4
Add nbdime to requirements
#25 by rkdarst was merged Sep 13, 2022 Loading…
1
7
do not require or install jupyterlab-github; closes #21
#24 by bast was merged Sep 13, 2022 Loading…
@johanhellsvik
3
environment-m1: Separate environment for Mac M1 no longer needed
#23 by rkdarst was merged Sep 13, 2022 Loading…
jupyterlab-github should work with the jupyterlab version
#19 by bast was merged Mar 9, 2022 Loading…
add myst-parser and sphinx-autobuild; closes #14
#18 by bast was merged Mar 9, 2022 Loading…
bump versions of dependencies
#17 by bast was merged Mar 8, 2022 Loading…
2
Bump numpy from 1.20.2 to 1.21.0 dependencies Pull requests that update a dependency file
#16 by dependabot bot was closed Mar 8, 2022 Loading…
2
target Python 3.9 in tests
#15 by bast was merged Mar 8, 2022 Loading…
1
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