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@gyorilab

Gyori Lab for Computational Biomedicine

Accelerating discovery in biomedicine using AI @ Northeastern University

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  1. emmaa emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    Python 11 11

  2. indra_db indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the dat…

    Python 17 11

  3. gilda gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    Python 44 13

  4. protmapper protmapper Public

    Map amino acid sites of post-translational modifications from models or data to reference positions.

    Python 7 7

  5. indra_world indra_world Public

    INDRA World Modelers services

    Jupyter Notebook 7 5

  6. indra_cogex indra_cogex Public

    INDRA Context Graph Extension

    Jupyter Notebook 11 13

Repositories

Showing 10 of 54 repositories
  • indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the database is the back-end to many of our projects, providing a vast and detailed knowledge base derived from many resources.

    gyorilab/indra_db’s past year of commit activity
    Python 17 GPL-3.0 11 7 3 Updated May 22, 2025
  • indra_curation Public

    A utility build around the HTML assembler to enable easy curation of custom sets of INDRA Statements.

    gyorilab/indra_curation’s past year of commit activity
    JavaScript 0 BSD-2-Clause 4 1 0 Updated May 20, 2025
  • emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    gyorilab/emmaa’s past year of commit activity
    Python 11 BSD-2-Clause 11 2 4 Updated May 16, 2025
  • biomappings-curation-app Public
    gyorilab/biomappings-curation-app’s past year of commit activity
    Python 1 0 0 0 Updated May 16, 2025
  • indra_cogex Public

    INDRA Context Graph Extension

    gyorilab/indra_cogex’s past year of commit activity
    Jupyter Notebook 11 BSD-2-Clause 13 21 8 Updated May 13, 2025
  • indra_signor Public

    Connecting INDRA to the SIGNOR database curation workflow

    gyorilab/indra_signor’s past year of commit activity
    Python 0 0 0 0 Updated May 13, 2025
  • gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    gyorilab/gilda’s past year of commit activity
    Python 44 BSD-2-Clause 13 8 7 Updated May 12, 2025
  • indra_may_institute Public
    gyorilab/indra_may_institute’s past year of commit activity
    Jupyter Notebook 1 1 1 0 Updated May 9, 2025
  • worm_lifespan Public

    Studying genes affecting lifespan in C. elegans using knowledge assembly and networks

    gyorilab/worm_lifespan’s past year of commit activity
    Jupyter Notebook 0 BSD-2-Clause 0 0 0 Updated May 6, 2025
  • mira Public

    MIRA: machine-assisted modeling of dynamical systems

    gyorilab/mira’s past year of commit activity
    Jupyter Notebook 13 BSD-2-Clause 7 17 4 Updated May 6, 2025
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