Code for manuscript "Papillary Thyroid Carcinoma: A thorough Bioinformatic Analysis of Gene Expression and Clinical data"
Scripts should be run in the following order:
GSE29265.R
GSE33630.R
TCGA_THCA.R
comparison.R
comparison_2.R
RFE.R
TCGA data is stored in "TCGA data" folder in the repository. You have to download all the included files manually since they are ignored by -gitignore file; given the size of one of the files. You should download manually, and put into a "TCGA data"" folder so they can be accessed from the script.
R.Version() $platform [1] "x86_64-apple-darwin17.0"
$arch [1] "x86_64"
$os [1] "darwin17.0"
$system [1] "x86_64, darwin17.0"
$status [1] ""
$major [1] "4"
$minor [1] "2.1"
$year [1] "2022"
$month [1] "06"
$day [1] "23"
$svn rev
[1] "82513"
$language [1] "R"
$version.string [1] "R version 4.2.1 (2022-06-23)"
$nickname [1] "Funny-Looking Kid"