These files contain pre- and post-processing code for running the ED2 model.
The SAS_spinup/ directory contains code for running the semi-analytical solution for ED:
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make_spinup_subdirs.sh constructs a directory and set of sub-directories, copies, and edits an example ED2IN file in order to run a spin-up from bare-ground at multiple sites.
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restart_spinup_histo_lite.sh restarts ED2 runs that have stopped by finding the last year and month written to the histo/ directory, editing the ED2IN file appropriately, and then re-submitting the job to the cluster (paleon_ed2_geo.sh in each site-level folder where ED2IN is).
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compile_SAS_runs.R contains the code to loop over the ED2 output analy and histo files to compile the relevant pools and fluxes to construct the .css and .pss files for the semi- analytical solution.
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phase1a_spinup/ directory contains the output (SAS .css and .pss files) from the compile_SAS_runs.R code.
The ED_process_output/ directory contains some random bits and pieces of plotting code (it's own github repository).
The met_drivers/ directory contains the PalEON met drivers for ED. Within this directory the script process_paleon_met.R will format the PalEON Phase 1a met drivers for input into ED2.
The phase1a_spininitial/ directory contains the Phase 1a 150-year initial spin-up results (before the semi-analytical solution is applied).
The phase1a_spinfinish/ directory contains the Phase 1a 150-year settling period run results (after the semi-analytical solution is applied, using .css and .pss files from SAS_spinup/phase1a_spinup/).
The phase1a_runs/ directory contains the Phase 1a PalEON runs post-spin-up period (where the years 850-2010 are represented as 1850-3010 due to problems running with 3-digit years).
paleon_reg/ contains some preliminary output for regional runs. Mostly just saving these because Mike wanted to give some regional data to Paul Duffy for preliminary script-making.
phase1a_env_drivers/ contains the PalEON Phase 1a site-level environmental drivers for the ED runs.
The archive PalEON_old_runz.tar.gz contains old runs (initial tests and things that didn't work out - mostly junk) that Jackie doesn't want to throw away quite yet.