Repositories list

• codeocean-sdk-python

  Public
  Code Ocean Python SDK

  Python

  •

  MIT License

  •4•6•0•2•Updated Jun 13, 2025Jun 13, 2025

• co-support

  Public
  Code Ocean Command-Line Assistant

  Python

  •0•0•0•0•Updated May 21, 2025May 21, 2025

• r-seurat-demo

  Public template
  0•0•0•0•Updated May 13, 2025May 13, 2025

• seurat-demo

  Public template
  HTML

  •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

• single-cell-tutorial

  Public template
  Jupyter Notebook

  •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

• pipeline-training-prep

  Public
  Python

  •0•1•0•0•Updated Jan 14, 2025Jan 14, 2025

• go-mlflow

  Public
  Golang MLflow SDK

  Go

  •

  MIT License

  •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• AIBS_training

  Public
  HTML

  •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

• amazon-ebs-autoscale

  Public
  Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.

  Shell

  •

  MIT License

  •60•0•0•0•Updated Jul 3, 2024Jul 3, 2024

• aibs-patch-seq

  Public template
  Jupyter Notebook

  •0•1•0•0•Updated Jun 25, 2024Jun 25, 2024

• aibs_thalamus_merfish

  Public template
  Jupyter Notebook

  •2•0•0•0•Updated Apr 6, 2024Apr 6, 2024

• co-apps-mutect-preprocess

  Public
  Shell

  •0•0•0•0•Updated Nov 29, 2023Nov 29, 2023

• co-apps-gatk-mutect2-tumor-only

  Public
  Shell

  •0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

• co-apps-gatk-mutect2

  Public
  Shell

  •0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

• co_aux_tools

  Public
  Convenince tools for working in Code Ocean capsules and pipelines.

  Python

  •

  MIT License

  •0•3•0•0•Updated Nov 9, 2023Nov 9, 2023

• co-apps-combfold-prepare-fasta

  Public
  This capsule outputs fasta files which can be input for AlphaFold Multimer or ColabFold.

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 5, 2023Oct 5, 2023

• co-apps-combfold-combinatorial-assembly

  Public
  The CombFold Combinatorial Assembly algorithm assembles paired subunit structures into a single large complex.

  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 5, 2023Oct 5, 2023

• text-notification

  Public
  Add text notifications to your Code Ocean workflows.

  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 3, 2023Oct 3, 2023

• casule_databricks_data_asset_generation

  Public
  Python

  •0•0•0•0•Updated Jul 17, 2023Jul 17, 2023

• capsule_databricks_data_connector

  Public
  This tool is designed to create a connection between Code Ocean and your SQL Warehouse in Databricks.

  Python

  •0•0•0•0•Updated Jul 17, 2023Jul 17, 2023

• capsule_mysql_r_odbc

  Public
  Capsule to connect to MySQL from RStudio

  R

  •0•0•0•0•Updated Jul 13, 2023Jul 13, 2023

• capsule_databricks_r_odbc

  Public
  Databricks connector to RStudio

  R

  •0•0•0•0•Updated Jul 7, 2023Jul 7, 2023

• coding_workshop

  Public
  Shell

  •0•0•0•0•Updated Apr 18, 2023Apr 18, 2023

• branding

  Public
  Code Ocean branding images

  0•0•0•0•Updated Feb 22, 2023Feb 22, 2023

• private-cloud

  Public archive
  Code Ocean Private Cloud Deployment

  TypeScript

  •0•2•0•5•Updated Aug 12, 2021Aug 12, 2021

• jupyter-matlab-proxy

  Public archive
  MATLAB Integration for Jupyter

  JavaScript

  •

  Other

  •41•0•0•0•Updated Mar 9, 2021Mar 9, 2021

• bucket-restore

  Public
  Point in time restores for buckets in Amazon Web Services (AWS) S3 and Google Cloud Platform (GCP) Storage.

  Go

  •

  Apache License 2.0

  •3•0•0•0•Updated Feb 28, 2021Feb 28, 2021

• echo

  Public
  High performance, minimalist Go web framework

  Go

  •

  MIT License

  •2.3k•0•0•0•Updated Dec 20, 2020Dec 20, 2020

• git2go

  Public
  Git to Go; bindings for libgit2. Like McDonald's but tastier.

  Go

  •

  MIT License

  •323•0•0•0•Updated Nov 13, 2020Nov 13, 2020

• s3-pit-restore

  Public
  Python

  •

  Other

  •119•0•0•0•Updated May 12, 2020May 12, 2020