Fun Tools for VCF
I have a blog written explain the thinking behind this. See How to make a python script scale on Cloud?
VCF cutter reads a VCF and writes a new VCF which only contains SNV.
docker pull oxfordmmm/funvcf:v0.1.0nextflow run vcf-python.nf --input data/ --pattern *.vcf --output tests-python -profile docker
nextflow run vcf-python.nf --input data/ --pattern *.vcf --output tests-python -with-singularity funvcf-v0.1.0.imgnextflow run vcf-cpp.nf --input data/ --pattern *.vcf --output tests-cpp -profile standardnextflow run vcf-nim.nf --input data/ --pattern *.vcf --output tests-nim -profile standard