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support conversion from RowDiff<Mutli-BRWT> to RowDiff<RowFlat> #520

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Merged
merged 5 commits into from
May 19, 2025

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@karasikov karasikov commented May 14, 2025

Example:

./metagraph build -k 31 -o test ../tests/data/transcripts_100.fa

./metagraph annotate -v -i test.dbg --anno-header -o annotation ../tests/data/transcripts_1000.fa
./metagraph transform_anno -v -p 36 --anno-type row_diff --row-diff-stage 0 -i test.dbg -o annotation_rd --mem-cap-gb 300 annotation.column.annodbg
./metagraph transform_anno -v -p 36 --anno-type row_diff --row-diff-stage 1 -i test.dbg -o annotation_rd --mem-cap-gb 300 annotation.column.annodbg
./metagraph transform_anno -v -p 36 --anno-type row_diff --row-diff-stage 2 -i test.dbg -o annotation_rd --mem-cap-gb 300 annotation.column.annodbg

./metagraph transform_anno -v -p 0 --anno-type row_diff_brwt -i test.dbg -o annotation --mem-cap-gb 300 annotation.row_diff.annodbg
./metagraph transform_anno -v -p 0 --anno-type row_diff_flat -i test.dbg -o annotation --mem-cap-gb 300 annotation.row_diff.annodbg

./metagraph transform_anno -v -p 0 --anno-type row_diff_flat -i IGNORED -o annotation_converted annotation.row_diff_brwt.annodbg

@karasikov karasikov requested review from hmusta and adamant-pwn May 14, 2025 21:07
@karasikov karasikov merged commit eadf135 into master May 19, 2025
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@karasikov karasikov deleted the mk/brwt_to_flat branch May 19, 2025 11:24
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